Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0394 ATGGCGGTTTTTGGCGGGAAAAAGGTCCATCAAATTGTCACCGGCATCGGCACCAACGGCCTTGCCCAGGTTGTCGTCGCCGTCGCTTTCTCCTTCCTTGTTCGCATCTTCTCCGCTCCCGGTCCCGCTCTCTTGCCGGATAACGACTACGACGACGACGACGACGATGTTCCAAATAACGATTCACCCGACGGCGAAACTCCTACTCCTACCGGAAAAGTCACGCCGGTCACAATCCGTTGGAACAATATTAATTGCTCCATTTCTGATAAATCCTCCAACTCCGTGAGGTTTCTGCTTAAAAATTTGAGTGGAGAAGCTAAGCCAGGAAGATTATTAGCCATAATGGGGCCTTCAGGTTCAGGGAAGACAACATTGCTTAATGTTCTTGCTGGTCAACTGGCAGCGTCGCCTCGGCTTCATTTGAATGGACTTTTGGAGTTCAATGGAAAGCCTAGTTCTAGAAACGCTTACAAGTTTGCTTATGTGAGACAGGAGGATCTCTTCTTCTCACAGCTTACTGTGAGGGAAACATTGTCTCTTGCTATAGAATTACAGCTTCCCCACATATCTTCTGTCGAAGAGAGGGATGAATATGTCAACAATCTCCTTTTCAAAATAGGCTTGGTCAGTTGTGCCGATACTAATGTTGGTGATGCAAAAGTTCGCGGAATCAGTGGTGGCGAAAAGAAACGTTTATCATTGGCATGTGAACTGCTTGCAAGCCCATCTGTTATATTTGCCGATGAACCCACAACAGGACTTGATGCCTTCCAGGCTGAGAAGGTTATGGAAACTCTGCGACAACTTGCACTCGACGGTCATACTGTAATTTGCTCTATACATCAGCCAAGAGGTTCAGTTTACAGCAAATTTGATGACATTATCTTGCTAACTGATGGTTCACTTGTTTATGCTGGTGCTGCTGGTGATGAACCATTGGCGTACTTCTCAAAATTCGGGTACCACTGCCCAGATCATGTTAATCCTGCAGAATTTTTGGCCGATCTTATATCCATAGACTACAGTTCTTCTGATAGTGTTTATTCTTCTCAAAAAAGGATCAATGGGCTTGTTGAGTCATTCTCACAAAGACAGTCTACAATAATATATGCTACTCCGATTACTCTAGATGACCTCTCAAAAAGTAGAAGGAGAATCAGCAAGAGGACTGTAGCAAAAAGGAAAGGGGGCTGGTGGAAGCAATTCTGGTTGCTTCTTAGACGGGCATGGATGCAGGCTTCCCGTGATGCACCTACCAACAAAGTTCGGGCAAGGATGTCAATTGCATCAGCAATTATCTTTGGGTCGGTTTTTTGGAGAATGGGAAAATCTCAGACTTCAATACAAGACAGAATGGGATTGCTTCAGGTTGCTGCAATAAACACGGCTATGGCTGCTCTCACAAAGACTGTAGGCGTGTTTCCGAAGGAACGGTCAATTGTTGATAGAGAACGTGCCAAAGGCTCCTATACCTTGGGCCCCTATCTGTTTTCAAAACTGTTGGCTGAGGCTCCCATTGGAGCAGCATTTCCATTAATGTTCGGTGCTGTTTTATACCCAATGGCACGACTCCATCCTACTTTGATGAGATTTGGGAAATTCTGTGGAATCGTTACTGCGGAATCTTTTGCTGCATCTGCCATGGGTCTTACTGTTGGTGCTATGGTTCCAACCACCGAAGCAGCAATGGCAGTAGGCCCCTCTCTTATGACAGTCTTTATAGTATTTGGTGGCTACTATGTCAACCCCGAGAATACCCCAATTATCTTCCGATGGATTCCTAGTGTTTCTCTGATTAGATGGGCCTTTCAAGGACTTTGCATCAACGAATTTCATGGTCTTCAATTTGATCATCAGAATTCATTTGATACTCAAACCGGAGAACAGGCACTAGAGCGTCTTTCCTTTGGAAGAAGTACAATTAGGGATACATTGTTAGCGCAAAATAGAATATTGTTATTTTGGTATTGCACCACCTATCTTCTCCTTGAGAAAAACAAGCCCAAATATCAGCAACTTGAAACAACCCCTCCTACCCACGGCAAACCGCATTTAAAACTCGAGGAGTTAAATTCTGAACAAGTTGATCAGACACATGAAGCACCCGAGGTCAGCCAAACTGGTCCTGCATCCGACGAGCCCCTTGATTCAACTGAAGTCGACCCTGTTGGCTCTTTTATACTAGAAGAGTGA 2196 0.449 MAVFGGKKVHQIVTGIGTNGLAQVVVAVAFSFLVRIFSAPGPALLPDNDYDDDDDDVPNNDSPDGETPTPTGKVTPVTIRWNNINCSISDKSSNSVRFLLKNLSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLAASPRLHLNGLLEFNGKPSSRNAYKFAYVRQEDLFFSQLTVRETLSLAIELQLPHISSVEERDEYVNNLLFKIGLVSCADTNVGDAKVRGISGGEKKRLSLACELLASPSVIFADEPTTGLDAFQAEKVMETLRQLALDGHTVICSIHQPRGSVYSKFDDIILLTDGSLVYAGAAGDEPLAYFSKFGYHCPDHVNPAEFLADLISIDYSSSDSVYSSQKRINGLVESFSQRQSTIIYATPITLDDLSKSRRRISKRTVAKRKGGWWKQFWLLLRRAWMQASRDAPTNKVRARMSIASAIIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERSIVDRERAKGSYTLGPYLFSKLLAEAPIGAAFPLMFGAVLYPMARLHPTLMRFGKFCGIVTAESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNPENTPIIFRWIPSVSLIRWAFQGLCINEFHGLQFDHQNSFDTQTGEQALERLSFGRSTIRDTLLAQNRILLFWYCTTYLLLEKNKPKYQQLETTPPTHGKPHLKLEELNSEQVDQTHEAPEVSQTGPASDEPLDSTEVDPVGSFILEE* 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0394 731 Pfam ABC transporter 100 252 IPR003439 GO:0005524
Tpr1g0394 731 SMART AAA_5 109 302 IPR003593 -
Tpr1g0394 731 Pfam ABC-2 type transporter 402 612 IPR013525 GO:0016020|GO:0140359
Tpr1g0394 731 MobiDBLite consensus disorder prediction 689 731 - -
Tpr1g0394 731 ProSitePatterns ABC transporters family signature. 225 239 IPR017871 GO:0005524
Tpr1g0394 731 PANTHER ABC TRANSPORTER G FAMILY MEMBER 7 1 680 - -
Tpr1g0394 731 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 680 - -
Tpr1g0394 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 310 IPR027417 -
Tpr1g0394 731 CDD ABCG_EPDR 76 307 - -
Tpr1g0394 731 Pfam ABC-2 type transporter 282 340 IPR043926 GO:0140359
Tpr1g0394 731 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 79 325 IPR003439 GO:0005524
Tpr1g0394 731 Gene3D - 72 312 IPR027417 -
Tpr1g0394 731 MobiDBLite consensus disorder prediction 698 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0394 Tpr-Chr1 3382646 3390264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0394 99 308 Calmodulin-binding Proteins AT2G36910 27.189 6.18e-11 64.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0394 1 3382646 3390264 Tpr1g0394 1 3382646 3390264 ECH