Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0376 ATGGCCTCGTCGCAGTCTTCCTCCGCCGCAGGAAACACCAACATCATGCTCGCAATCTTCGAAAAGAAAACAAACACCGTAGATCTCTACCGTCCACTCCGCAATTACATCGCTTTTCACTACTCCGAACGCGAAGCACAAAACCTCGAAGACGATCTCCAAACCCTAAAACAACTCCGTTCCGACCTAGAACGTCACTCCGATCCATCTCTCCCTGCACGCCGTGACCTTTTCCAAACCTATTTCAAAGCACTATGTCAAGTCGAAACTCGATTTCCAATTTCACCTGAACCTGATCATGTCAACGCACTCACTTTCGTTTGGTTTGATGCATTCAAACCGAAGCTAAAAGCTTCTCAGCAAAATATTCACCTTGAGAAAGGTTCCGTGTTGTTCAATTTAGGCGCTGTTTATAGTCAGATTGGATTGACGTTTGATCGGAATACTGTCGATGGCCGGCGTCAGGCTTCTCATGCCTTTATGGCTGCTGCTGGTTCATTTGTTTATCTTAGAGATAATGCCTCTATGAAAGTCTCTGTTGGAAGTTCCACTACTCTCGATTTGTCCGTCGAGTGTGCTGGAATGTTGGAGAAGCTTATGCTTGCTCAGGCTCAGGAGTGTGTCTTTGAAAACACCATTGCCAAAGGAAGTACCCCTGGTGTTTGTGCTAAGATCTCTAGGCAGGTTGGGTTGTATTATGAGGAAGCATTGGCTGCACTGAATGTTGCGCCTTTAAGCCAGCATTTTGATAAGTCTTGGATAGTTCATGTGCAGTTGAAGGCAGCTATATTCTTTGCAGAAGCTTGTTATAGGTATGGATTAGAGCTGCATGAGAAAGAGGAAATAGCAGAGGAGATTGCACGGCTGAAGAGTGCTATTAGTGTGCTCACTGAGGCGAAGAAAAACTCCAAGGGTGCTGCAGCGCAGCTTCTTGATGCAATTAACAAGTTAGAGGTTAATATAAACAGAAACCTTGAAAGGGCTGTCAAGGAGAATGATAGAGTTTATCTGATGAGAGTTCCTCCTGCTAGTTCATTGTCACCTCTTCCGGCGTTTGCTATGGTAAAGCCGATGGTCATGAGTGAGGTGCTGGATGCGAGCAAAGAGAAGATGTTTGCAAGTCTTGTTCCCGACAATAGTGCCAAGGCCCTCTCTAGGTACACTGAAATGGTTGATGACATTATAAGAACACAAGCCGAGAAGTTGCAGCAGGCTAGTGAGCTAACCCGAGTTAGGCTTAAGGAAATGGAATTGCCAGATTCTATTCTTGCTTTGGAAGGGAATTTTACTCTACCGACAAGTCTCAAAGAAGATGTGGAGGCTGTGCAGATCAGTGGGGGCCCTGCTGGTTTGGAATCAGAGTTGCAACAACTTAAGGACCTAAGGAGGGTGAATCAAGAACTGCTGGTCCAGACCGAGGAGTTGTTGCAGAAGGAATCAAGAGAAGATGCTCAATTTAGAAGTCAATTTGGCACCAAATGGACTAGGCCTCAGTCAAGCACATTGACAAAGAACTTGTTGGATAGACTAAATAGGTTTGCAGGTAACTTGAAGCAAGCTGCTGATAGTGATGCTAGGATTGAGCGTTCAGTTAGAGAACATTCAGCACTCATGGCAATCCTTGATGCCCGTCCGATTGAATCTGCACTTCCAAGCCTGGCAAGGCCAATTATGTCTTTTGATCAAAATGAAGATGCTATCGTAGGGTCTCTCAAACAAAGCTTGAGGCAACTAGAGACTCTAGGAGCTCAAAGGGCTGGTCTTGAAGACATGCTTAGAGAGATGAAAAGAAAGGATGATATATTACCCAAGCTGATGACATCCACCGGTTCTTATGAGGATCTTTTTAGAAAGGAGATAGCAAAATATGACCATATTTCTGAAGAAATAGCTCAAAATATTGAGGCACAAGAGCAACTTTTGCTGCAAATCCAGGCTCAAAATGATGATTTCTCTGTTATCTTCAACCTTGAAGATTACAAATCTTCACGTGAAAAATCCTACAAGCAGATTGAAGCTGCCATTGCAAAGTTTCGTGAAATAAAGGACAATATCAATGAAGGGTTAAAATTCTATGTTACCCTACAGGATGCAATCACAAATGTAAAGCAGCAGAGCAATGACTTTGTAATGACAAGGAACATCCAGTGTCGGGAAATGATTGAAGATGTTCAGAGACAAGTAGCTGGTCTGAGTTTCCAGGATAAAAACACAGGTGGCTATAACAACTACCCTTCAGTGGGAAACCAAAACCAAAGATCCAATACGCAAACAGATCCTCGTCCACAAGCACCTTATTATCAGCAACCTGAGCAGCCACCAGCTCCTGCCTATGGGCAGGCCCCTCCCCCATATGGCTCTGCACATCATCAGCCTCCACCTCCATACCAAATTCCACCAACATCAGCTTCTCCGTACCCACCCCCTCAGGTCCATCAGCAGCAGCAGCCTCCACCAAACCATGATTATGGCCAACCTGCATATCCCGGATGGCGTGGTCAGTACTACAATGCACAGTCACACCCACAACAACAACCTCCTCCTTCTGGTCCTCGGCCTCCTTATACCATTCCATCTCCATATCCTCCACCTCACCAAGGTGGATACTATAAGCAGCAATAG 2622 0.4512 MASSQSSSAAGNTNIMLAIFEKKTNTVDLYRPLRNYIAFHYSEREAQNLEDDLQTLKQLRSDLERHSDPSLPARRDLFQTYFKALCQVETRFPISPEPDHVNALTFVWFDAFKPKLKASQQNIHLEKGSVLFNLGAVYSQIGLTFDRNTVDGRRQASHAFMAAAGSFVYLRDNASMKVSVGSSTTLDLSVECAGMLEKLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNVAPLSQHFDKSWIVHVQLKAAIFFAEACYRYGLELHEKEEIAEEIARLKSAISVLTEAKKNSKGAAAQLLDAINKLEVNINRNLERAVKENDRVYLMRVPPASSLSPLPAFAMVKPMVMSEVLDASKEKMFASLVPDNSAKALSRYTEMVDDIIRTQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTSLKEDVEAVQISGGPAGLESELQQLKDLRRVNQELLVQTEELLQKESREDAQFRSQFGTKWTRPQSSTLTKNLLDRLNRFAGNLKQAADSDARIERSVREHSALMAILDARPIESALPSLARPIMSFDQNEDAIVGSLKQSLRQLETLGAQRAGLEDMLREMKRKDDILPKLMTSTGSYEDLFRKEIAKYDHISEEIAQNIEAQEQLLLQIQAQNDDFSVIFNLEDYKSSREKSYKQIEAAIAKFREIKDNINEGLKFYVTLQDAITNVKQQSNDFVMTRNIQCREMIEDVQRQVAGLSFQDKNTGGYNNYPSVGNQNQRSNTQTDPRPQAPYYQQPEQPPAPAYGQAPPPYGSAHHQPPPPYQIPPTSASPYPPPQVHQQQQPPPNHDYGQPAYPGWRGQYYNAQSHPQQQPPPSGPRPPYTIPSPYPPPHQGGYYKQQ* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0376 873 Pfam ALIX V-shaped domain binding to HIV 431 715 IPR025304 GO:0005515
Tpr1g0376 873 SMART BRO1_2 15 399 IPR004328 -
Tpr1g0376 873 CDD BRO1_Alix_like_1 16 371 - -
Tpr1g0376 873 MobiDBLite consensus disorder prediction 735 765 - -
Tpr1g0376 873 MobiDBLite consensus disorder prediction 844 865 - -
Tpr1g0376 873 CDD V_Alix_like_1 377 713 - -
Tpr1g0376 873 Coils Coil 307 327 - -
Tpr1g0376 873 MobiDBLite consensus disorder prediction 766 815 - -
Tpr1g0376 873 Gene3D alix/aip1 in complex with the ypdl late domain 377 655 - -
Tpr1g0376 873 Coils Coil 279 299 - -
Tpr1g0376 873 Coils Coil 39 66 - -
Tpr1g0376 873 PANTHER PCD6 INTERACTING PROTEIN-RELATED 8 856 IPR045251 GO:0071985
Tpr1g0376 873 Coils Coil 578 598 - -
Tpr1g0376 873 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 8 856 - -
Tpr1g0376 873 ProSiteProfiles BRO1 domain profile. 14 409 IPR004328 -
Tpr1g0376 873 Gene3D alix/aip1 like domains 12 376 IPR038499 -
Tpr1g0376 873 Coils Coil 627 647 - -
Tpr1g0376 873 MobiDBLite consensus disorder prediction 735 873 - -
Tpr1g0376 873 Coils Coil 451 478 - -
Tpr1g0376 873 Pfam BRO1-like domain 16 394 IPR004328 -
Tpr1g0376 873 Gene3D alix/aip1 like domains 423 704 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0376 1 3267625 3273527 Tpr1g0376 1 3267625 3273527 ECH