LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g0343	ATGGAGGCGCAACAACAACCTCCAACGCCGTCAACCGCACCGCCGTTATCCTCCGTCGCACCTCCGCCACCACACCTCAATTATCCCGAATCTGTCGATTCCTCACCTCGCTCCCGCAACACCGACTCATGGGACGAACCTTTCCCTCCAGCGTCATCAAAACTCCGTCTGATGTGCAGTTACGGTGGCCACATCGTTCCTCGTCCACATGACAAATCACTCTGTTACGTCGGTGGTGACACACGAATCGTCGTCGTTGAACGCGCAACCTCACTCGCGGACCTATCCACGCGCCTCTCCAAAACCTTCCTTAACGGAAGATCTTTCACCCTCAAGTATCAACTCCCAAACGAAGACCTAGATTCGTTGATTTCAGTTACAACCGATGAAGACCTAGAAAATATGATCGATGAATACGATCGAACGAATTCGTCAAATTCATCTCTCAAACCCTCACGAATTCGTCTTTTTCTGTTTCCAACTAAACCTGAATCTGCTCAATCAATTCCTCCACAAATTCTTGATACTTCTGCGAAATCCGATTATTGGTACCGTGATGCGTTAAACGGTGCTGGATTGCTTAACAGAGGGTATTCAGATTCTGCTTCTGTTAACTGTCTTTTAGGTCTTGATGATGATGTTGCTGCTTCGAATAATATTGAAACTGGTTCAAGAGAAGCTCCTGAAGGTGTTTCTCAACCTGGATCTTTTGGAAATGGTAAGAATTTGAAGCAAGATGTTCACTCTGTTCCTGATTCACCTATGTTGGAGACTTCATCGTCTTTTGGTTCAACTTCTTCGTCTCCGTCGTTGGCTAATTTGCCGCCGATTAGGGTGCATGTGGAAGATGGTGGTTCTGGTGGTGTTAGGGGACAACAGCAACAACTGCAACAGCAGCAGCAGGATCAGAAGGTTTTGGGAATTGAGGAACAGTTTGCTCAAATGGGAGTTGTGGTTGGTGGAGTTGGACAGAAGCAACAGGATGAGGGATTTGCTGTGATGTCTTCGCCGCCTCATCCTCCGGTGCCAACTACGCTTTCTGTGGCTGCTGTTGGTGTTCCAGTGGTTATTGGTGATTATCAGAATAGGGTTTTCTCTGATGACGAGAGATCGGATCATGGAGTGGCTGTAGGATATAGAAAACCACCAACTCCTCAGCCACAGATTGTTCAAGCACAATCTCAGGCACAATCTCAAGCACAATCTCAGGCACAATCTCAAGCGCAAACACAGACACAGTCACAACAACCTCCTCAATTTCAACAGAAGTCAAGTGGTGGTACTGATTTGCCTTCTCCTGATTCAGTTTCAAGTGATAATAGTCTTTCGAATGCAATGCCGCGTCAAACACCTGTTATCTATCAAGAGCAAATTCAGATTCAACCTGGAACTACAAGGGTTCTAAGCAACCCTGTGGATCCAAAACTCAATTTGGCTGATTCACATGGTAGGATCCAGGTGCAGCAACATGTACAGGACCCTGGATATTTACTGCAACAGCAATTTGAACTCCAGCAGCAGCAACAACAGCCTCAACATCAGCCTCAACATCAGCAGCAACAACAATTTCAACATCAGCAGCAGCAGCAGTTTATACACGGTGGACACTACATTCATCATAACCCTGCAATTCCTACATACTATCCTGTATATCCTTCACAACAACAACCCCATCAGCAGGTTTACTATGTGCCTGCAAGACAGCCACAAGCTTACAATCTTCCTGTGCAGCAGAGTAATATAGGTGAATCTGCCCCAACAATCTCTTCTAGTAGACCCCAAAACCCTCCAAACCCCACTACATTGGTTCAACAAAATGCAACTTACACCCCCGTCAGAAATTCTCCTCTACCCAAAACTGAAATGACGGCAGCTGCTTACAGAACTGCAACTGCAGGCAACCCTCAATTTGTACAAGTTCCTACAGGTCAGCATCAGCAGCAATATGTGACTTACTCCCAGATCCACCATCCATCCCAATCCATGGCCCCTAATTCTGCTGCCCCTGCCAATTATGCTTATGAATATGCTGATGCTGGTCAAATATACTACTCTCAGCCTATGGCACCCACAATGCCGTCACAGTACCAGACCATGGCAGCTGCTAATATGATGCAGCCGGAAATTTCTGCACAGCATCCATCAGACGGCTTGAAGCAGCAGATAAGAACCTCACAGCCACTATAA	2187	0.4655	MEAQQQPPTPSTAPPLSSVAPPPPHLNYPESVDSSPRSRNTDSWDEPFPPASSKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIVVVERATSLADLSTRLSKTFLNGRSFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTNSSNSSLKPSRIRLFLFPTKPESAQSIPPQILDTSAKSDYWYRDALNGAGLLNRGYSDSASVNCLLGLDDDVAASNNIETGSREAPEGVSQPGSFGNGKNLKQDVHSVPDSPMLETSSSFGSTSSSPSLANLPPIRVHVEDGGSGGVRGQQQQLQQQQQDQKVLGIEEQFAQMGVVVGGVGQKQQDEGFAVMSSPPHPPVPTTLSVAAVGVPVVIGDYQNRVFSDDERSDHGVAVGYRKPPTPQPQIVQAQSQAQSQAQSQAQSQAQTQTQSQQPPQFQQKSSGGTDLPSPDSVSSDNSLSNAMPRQTPVIYQEQIQIQPGTTRVLSNPVDPKLNLADSHGRIQVQQHVQDPGYLLQQQFELQQQQQQPQHQPQHQQQQQFQHQQQQQFIHGGHYIHHNPAIPTYYPVYPSQQQPHQQVYYVPARQPQAYNLPVQQSNIGESAPTISSSRPQNPPNPTTLVQQNATYTPVRNSPLPKTEMTAAAYRTATAGNPQFVQVPTGQHQQQYVTYSQIHHPSQSMAPNSAAPANYAYEYADAGQIYYSQPMAPTMPSQYQTMAAANMMQPEISAQHPSDGLKQQIRTSQPL*	729

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g0343	728	Pfam	PB1 domain	70	160	IPR000270	GO:0005515
	Tpr1g0343	728	ProSiteProfiles	PB1 domain profile.	54	161	IPR000270	GO:0005515
	Tpr1g0343	728	MobiDBLite	consensus disorder prediction	8	29	-	-
	Tpr1g0343	728	MobiDBLite	consensus disorder prediction	581	603	-	-
	Tpr1g0343	728	MobiDBLite	consensus disorder prediction	364	445	-	-
	Tpr1g0343	728	SUPERFAMILY	CAD & PB1 domains	70	169	-	-
	Tpr1g0343	728	MobiDBLite	consensus disorder prediction	503	530	-	-
	Tpr1g0343	728	MobiDBLite	consensus disorder prediction	31	47	-	-
	Tpr1g0343	728	CDD	PB1_UP2	58	159	-	-
	Tpr1g0343	728	MobiDBLite	consensus disorder prediction	706	728	-	-
	Tpr1g0343	728	Gene3D	-	74	159	-	-
	Tpr1g0343	728	PANTHER	EXPRESSED PROTEIN	15	719	-	-
	Tpr1g0343	728	SMART	PB1_new	69	159	IPR000270	GO:0005515
	Tpr1g0343	728	MobiDBLite	consensus disorder prediction	386	445	-	-
	Tpr1g0343	728	MobiDBLite	consensus disorder prediction	222	301	-	-
	Tpr1g0343	728	MobiDBLite	consensus disorder prediction	252	273	-	-
	Tpr1g0343	728	MobiDBLite	consensus disorder prediction	1	49	-	-
	Tpr1g0343	728	PANTHER	OS05G0427100 PROTEIN-RELATED	15	719	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g0343	Tpr-Chr1	3003444	3006387	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g0343	51	232	MAP Kinase Kinase Kinase	AT1G79570	33.514	6.73e-25	109

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr1g0343	1	3003444	3006387	Tpr1g0343	1	3003444	3006387	ECH
	Tpr1g0343	1	3003444	3006387	Tpr3g0267	3	3073799	3075283	ECH
	Tpr1g0343	1	3003444	3006387	Tpr5g0295	5	4384477	4387551	ECH