Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0339 ATGGACTCAAATACTTCTAGTTTTCTTTTGAACTCTTCAACTTTTCACTCAGTTTTCTATCAGGATAAGCAAGATGATGGCATAATTGATCTTGGTCTTAGTCTTGGAAGTGTTCAACATGATGCTTATCATTCTTCTTCCAATTTGTATGATGTTGACCTTATGGATTGGCCTAATCTGAAGAATTCAAGCACAACACATTGTAGATCTGCACATGAAAACTTTGATGAAGAAATAGAGGGGGTCCAGAGTAATGAGAGATGGGCTTATGTAAAGGTTAACATGGATGGGGTCTCTATTGGTAGGAAAATTTGTATTCTTGATCATGGAGGATACTCAAGTCTATCAATTCAATTAGAAGACATGTTTGGTAGCCAATCAGTGTCTGGTATAAGATTGTTTGAATCTGGATCAGAATATTCATTATTGTACAAGGACAGAGAAGATAATTGGAGGACTGTTGGTGATGTCCCATGGAAGGAGTTTGTAGAATGTGTGAAAAGGCTAAGGATTGCACGAAAGAATGGTGGCTATGTTAACATTTCATCTTAG 552 0.3678 MDSNTSSFLLNSSTFHSVFYQDKQDDGIIDLGLSLGSVQHDAYHSSSNLYDVDLMDWPNLKNSSTTHCRSAHENFDEEIEGVQSNERWAYVKVNMDGVSIGRKICILDHGGYSSLSIQLEDMFGSQSVSGIRLFESGSEYSLLYKDREDNWRTVGDVPWKEFVECVKRLRIARKNGGYVNISS* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0339 183 SUPERFAMILY CAD & PB1 domains 88 171 - -
Tpr1g0339 183 Pfam AUX/IAA family 61 174 IPR033389 -
Tpr1g0339 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 1 176 - -
Tpr1g0339 183 ProSiteProfiles PB1 domain profile. 88 176 IPR000270 GO:0005515
Tpr1g0339 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 176 IPR003311 GO:0005634|GO:0006355
Tpr1g0339 183 Gene3D - 82 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0339 Tpr-Chr1 2974860 2976385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0339 83 171 B3 DNA Binding Superfamily AT1G19220 37.079 3.32e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Tpr1g0339 AUX_IAA 5.3e-24 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0339 1 2974860 2976385 Tpr1g0339 1 2974860 2976385 ECH