Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0338 ATGTTCCATTTCCTCTTTTTTCTTCTCTTTTTCAACTCTCTTTCACCTCTAACATTTTCACTAAACCCTGAAGGTTATGTTCTCTTAACACTCAAACAAATCATCAAAGACCCACAAGGCTCTATGAACAATTGGAATTCTTCTGATCAAAACCCATGTTCATGGAATGGAATCACTTGCAAAGACCAAACTGTTGTTTCCATTAGTATCCCAAAAAGGAAACTTTATGGTTCTCTTCCTTCTTCACTAGGATCTCTTTCTCAGCTTCGTCATGTCAACTTCAGAAGCAACCAACTCTTTGGAGCTTTACCTCAAGAGCTTTTTCAAGCTCAAGGACTTCAAAGTTTGGTTCTTTATGGAAATTCCTTTTCTGGGTCTGTTCCTAGTGAGATTCAGAATCTCAGGTACCTTCAAACTTTAGATTTGTCACAAAATTTATTTAATGGGTCATTGCCTGCTTCAATTGTTCAATGTAAGAGACTTAAAACTCTTGTTTTAAGTAGAAACAATTTTACTGGTTTTTTGCCTAATGGATTTGGTACTGGTTTGTCTTCTCTTGAAAAATTAGACCTTTCTTTCAATCAGTTTAATGGGTCAATTCCTAGTGACATGGGGAATTTGTCAAGTTTGCAAGGAACTGTTGATTTGTCTCATAATCATTTTAGTGGTTTAATTCCAGCTAGCCTTGGAAATTTGCCTGAGAAGGTTTATATTGATCTTACTTACAATAATTTGAAAGGTCCAATACCACAAAATGGTGCTTTAATGAATAGAGGACCAACTGCTTTTATTGGTAATCCTGGTTTATGTGGTCCACCTTTGAAGAATCCATGTGGTTCTGATGTTCCTGCTACCAGTTCACCTTCCTCGAATCCAAATCTTCCTGAGAATTCTCCACCAAACGGTGCTGGAAGTGGTATTGGGGGAAGTGAGAAAAACAAAGGGCTAAGTAAAGGTGCTGTGGTTGGCATTGTTGTAGGTGATTTAATTGGAATTTGTCTTTTAGGTTTGTTGTTCTCTTTCTTTTACTCGAGGGTTTGCGGTTTTAATCAGGATCAAGAAGAAAATGATCTTAACAAGGGAAGGAAAGGAAGGAAAGAGTGTTTTTGTTTCAGAAAGGATGATTCTGAGGCACTATCTGATAATGTTGAGCAATATGATCTTGTTCCATTAGATTCCCAGGTCGCTTTTGATTTGGATGAGCTTCTTAAGGCTTCCGCTTTTGTTCTTGGTAAGAGTGGAATTGGGATTATGTACAAAGTTGTTCTCGAAGAGGGGATTGCTTTGGCTGTGAGAAGATTGGGGGAGGGAGGTTCTCAGAGGTTTAAAGAGTTTCAAACAGAAGTAGAAGCTATAGGGAAGTTAAGACACCCAAATATCGCTACTCTTAGAGCCTATTATTGGTCTGTTGACGAGAAGCTTCTCATATATGATTATATACCAAATGGAAGCCTTGCTACAGCAATTCATGGGAAGCCTGGACTTGTCACATTTACGCCGCTAAGTTGGCCGGACCGGTTGAAAATCATGAAAGGAACTGCAAAAGGATTAACCTATCTGCATGAATTCAGCCCGAAAAAATATGTCCATGGAGATCTGAAGCCAAGTAACATACTTCTTGGACTTGACATGACACCCTACATTTCCGATTTCGGTCTAGGGCGCCTCGCAAACATCGCTGGCGGTTCACCAACCCTGCAATCGAACCGAGTGGCTGCAGAAAAACTGCAAGAAAAACAAAAGAGCTTGTCCCACGAAGTAGCAGCAAATATTTTGGGAAATGGTTATCAAGCTCCAGAAGCACTAAAAGTGGTGAAGCCATCACAGAAATGGGATGTTTATTCATATGGTGTGATATTGTTAGAATTGATTACAGGAAGATTACCTATTGTTCAAGTAGGTAACTCAGAAATGGACCTTGTTGAATGGATTCAGTTCTGCATTGAAGAGAAGAAGCCACTCTCAGATGTGTTGGATCCATATTTGGCTGAAGATGCAGATAAAGAGGAAGAGATAATTGGAGTTTTGAAAATTGCAATGGCTTGTGTTAATAGCAGCACTGAAAAGAGACCTACAATGAGGCATGTACTTGATGCTTTGGATAGATTGTCTGTTTCATCTGATTGA 2127 0.3912 MFHFLFFLLFFNSLSPLTFSLNPEGYVLLTLKQIIKDPQGSMNNWNSSDQNPCSWNGITCKDQTVVSISIPKRKLYGSLPSSLGSLSQLRHVNFRSNQLFGALPQELFQAQGLQSLVLYGNSFSGSVPSEIQNLRYLQTLDLSQNLFNGSLPASIVQCKRLKTLVLSRNNFTGFLPNGFGTGLSSLEKLDLSFNQFNGSIPSDMGNLSSLQGTVDLSHNHFSGLIPASLGNLPEKVYIDLTYNNLKGPIPQNGALMNRGPTAFIGNPGLCGPPLKNPCGSDVPATSSPSSNPNLPENSPPNGAGSGIGGSEKNKGLSKGAVVGIVVGDLIGICLLGLLFSFFYSRVCGFNQDQEENDLNKGRKGRKECFCFRKDDSEALSDNVEQYDLVPLDSQVAFDLDELLKASAFVLGKSGIGIMYKVVLEEGIALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYIPNGSLATAIHGKPGLVTFTPLSWPDRLKIMKGTAKGLTYLHEFSPKKYVHGDLKPSNILLGLDMTPYISDFGLGRLANIAGGSPTLQSNRVAAEKLQEKQKSLSHEVAANILGNGYQAPEALKVVKPSQKWDVYSYGVILLELITGRLPIVQVGNSEMDLVEWIQFCIEEKKPLSDVLDPYLAEDADKEEEIIGVLKIAMACVNSSTEKRPTMRHVLDALDRLSVSSD* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0338 708 SMART LRR_typ_2 134 158 IPR003591 -
Tpr1g0338 708 SMART LRR_typ_2 183 207 IPR003591 -
Tpr1g0338 708 SMART LRR_typ_2 86 110 IPR003591 -
Tpr1g0338 708 Pfam Protein kinase domain 410 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0338 708 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 707 - -
Tpr1g0338 708 Gene3D Ribonuclease Inhibitor 75 281 IPR032675 -
Tpr1g0338 708 Gene3D Ribonuclease Inhibitor 17 74 IPR032675 -
Tpr1g0338 708 SUPERFAMILY Protein kinase-like (PK-like) 409 700 IPR011009 -
Tpr1g0338 708 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 5 707 - -
Tpr1g0338 708 CDD STKc_IRAK 410 703 - -
Tpr1g0338 708 Pfam Leucine rich repeat 160 211 IPR001611 GO:0005515
Tpr1g0338 708 Pfam Leucine rich repeat N-terminal domain 22 60 IPR013210 -
Tpr1g0338 708 Gene3D Phosphorylase Kinase; domain 1 375 479 - -
Tpr1g0338 708 ProSiteProfiles Protein kinase domain profile. 404 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0338 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Tpr1g0338 708 SMART serkin_6 409 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0338 708 SUPERFAMILY L domain-like 22 275 - -
Tpr1g0338 708 Gene3D Transferase(Phosphotransferase) domain 1 480 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0338 Tpr-Chr1 2969697 2972547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0338 21 708 Receptor kinase-like Gene Family AT2G01210 68.625 0.0 970
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tpr1g0338 Pkinase 2.5e-29 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0338 1 2969697 2972547 Tpr1g0338 1 2969697 2972547 ECH