Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0330 ATGAACCAAAAACAACCCTTCTTCTTTCTCTTCTCTTCTCCCTTGATTTATTCATACATCACCCTTTTCTATTTTCTTACCAGAACCACTCTATGCTATTGCCATGTACATCCAATTTTTACAGCTTGTGAGCCTAAAACATGTGGCAACCAAACTATAAGATACCCTTTCTACATCAAAGAAAAACAACAACCTTTTTGCGGCTACCCTGGTTTTGGTATCTCTTGTGACAATAATACTGGTTTTCCAATGCTTAATCTTACCAATACCTTTTACCCAATCCACCAGATTTTCTATCAAAATCAATCATTAAGGGTTTCCAATGCTGTTTTTTCAAGATCAACCATTAACATCAACAAAGGTTGTCTTTCACCTAGTCAAAACCTCAGTTTTCCTATTAACGTGTTCAATCTTGCACAAAACCAAACACAAGTGGTTTTGTTCTTTGGATGCGACTCAACAAAGCTACCCAGAGAGTTGCAAAGGAACACAATTGGTTGCTTTGCAGAAAACAAAACGAGTTCGGTTGTGGCATTGTATGGAGATGATAAAAATTCAAGCTTTGTGTCAAAGAATTGCAGGGATGGTGTGGTGCATGCTATGGTGGAAAATGGTGTGAAAGGTGAGATTGAAGAGTCGCTGAGAAATGGGTTTCTGTTGAATTGGATAGCTGCTGATTGTAGAGAGTGTTACGACAGTAGAGGGAGGTGTGGTTTTAATTCATCTATATATAGTTTCAGATGTTACTGTACTGATAGAGTTCATGCTGCAAAATGTGATTCAGCGAGAAAAGGACTAAGTCGGCATGCCAAACTGGGTATAGGTTTGAGTATTGGAATCGTAGGCATCTTGTTGATTGCTTTGCTGCTTCTCGTACGCTACAAACGAAAACATGCTATCTCAGTTGGGCACTTCCAATCTAGTTACTCTATTTCTGATTCCTCCATAAATCCACGCCGAGAAATGGGTAGTAAATACTTTGGAGTTCCACTATTCTCCTACGACGAGCTTAGAAAAGCAACAAACAATTTTGACCATAATAAAGAACTTGGAGATGGAGGCTTTGGTACTGTCTACTTCGGGAAACTTCCCGATGGACGTGAAGTTGCTGTCAAGCGTTTATACGAACACAACTATAGGAGGGTAGAACAGTTCATGAATGAAGTTAATATCCTGACAACTTTAAGGCACAAAAATCTTGTGTCCCTCTATGGCTGCACATCACGGCACAGCCGTGAACTACTGCTTGTGTATGAATATATCTCAAATGGCACCATTGCATCTCACCTCCATGGTGAATTGGCCAAGCCCGGCTTACTACCATGGTCTATACGAATTAAAATTGCTATAGAAACCGCTACTGCCTTGGCTTATCTCCACGCTTCTGGTATCATTCACCGTGATGTGAAAACAAACAACATACTCCTTGATGACAATTTTGGTGTTAAAGTTGCAGATTTTGGCCTTTCAAGACTCTTCCCTGAAGATGCCACTCATGTCTCCACAGCTCCACAAGGGACACCAGGTTACCTTGACCCCGAGTATCACCAATTTTATCAGCTTACCAGCAAGAGTGATGTATATAGTTTTGGAGTTGTGCTCATTGAGCTAATATCATCTAAGCCTGCTGTTGATATAAACAGAAGTAGGGAAGAGATTAACTTGTCAACTCTAGCCACAAGGAAGATTCAAGAAAGTGCAATTGATGAACTGGTAGATCCTTGTCTTGGTTTTCATTCAGACGATGAGGTTAATAGGATGATAGTTTCAGTGGCAGAATTGGCTTTTCAATGTTTGCAAAGGGATAAGGAGTTGAGACCTTCTATGGAAGAAGTCTTGGATGAACTTAGGAGAATAGAGAGTGGTAAGGACATGGTTGAGGTTGTAGAAGAGGCAGATGTTGATGATGTTGGGTCTTCACACAGTAATGTAAATCCACCACCAATACTAGCCTCACCTGAATGGGATGAAGTTGGATTGTTGAAGATTATGAAAAATGTGAAGCATCCTTCTTCACCAAACACCGTCACTGATAAATGGGAAAGTATAAGTACTACTCCTAATGCCAGTGCGTAA 2076 0.4032 MNQKQPFFFLFSSPLIYSYITLFYFLTRTTLCYCHVHPIFTACEPKTCGNQTIRYPFYIKEKQQPFCGYPGFGISCDNNTGFPMLNLTNTFYPIHQIFYQNQSLRVSNAVFSRSTININKGCLSPSQNLSFPINVFNLAQNQTQVVLFFGCDSTKLPRELQRNTIGCFAENKTSSVVALYGDDKNSSFVSKNCRDGVVHAMVENGVKGEIEESLRNGFLLNWIAADCRECYDSRGRCGFNSSIYSFRCYCTDRVHAAKCDSARKGLSRHAKLGIGLSIGIVGILLIALLLLVRYKRKHAISVGHFQSSYSISDSSINPRREMGSKYFGVPLFSYDELRKATNNFDHNKELGDGGFGTVYFGKLPDGREVAVKRLYEHNYRRVEQFMNEVNILTTLRHKNLVSLYGCTSRHSRELLLVYEYISNGTIASHLHGELAKPGLLPWSIRIKIAIETATALAYLHASGIIHRDVKTNNILLDDNFGVKVADFGLSRLFPEDATHVSTAPQGTPGYLDPEYHQFYQLTSKSDVYSFGVVLIELISSKPAVDINRSREEINLSTLATRKIQESAIDELVDPCLGFHSDDEVNRMIVSVAELAFQCLQRDKELRPSMEEVLDELRRIESGKDMVEVVEEADVDDVGSSHSNVNPPPILASPEWDEVGLLKIMKNVKHPSSPNTVTDKWESISTTPNASA* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0330 691 SMART serkin_6 344 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0330 691 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 37 690 - -
Tpr1g0330 691 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Tpr1g0330 691 Pfam Wall-associated receptor kinase galacturonan-binding 43 107 IPR025287 GO:0030247
Tpr1g0330 691 Gene3D Transferase(Phosphotransferase) domain 1 421 633 - -
Tpr1g0330 691 MobiDBLite consensus disorder prediction 670 691 - -
Tpr1g0330 691 CDD STKc_IRAK 350 619 - -
Tpr1g0330 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Tpr1g0330 691 Pfam Wall-associated receptor kinase C-terminal 179 252 IPR032872 -
Tpr1g0330 691 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 37 690 IPR044652 -
Tpr1g0330 691 Gene3D Phosphorylase Kinase; domain 1 316 420 - -
Tpr1g0330 691 Pfam Protein kinase domain 345 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0330 691 ProSiteProfiles Protein kinase domain profile. 344 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0330 691 SUPERFAMILY Protein kinase-like (PK-like) 321 616 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0330 Tpr-Chr1 2831210 2841422 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0330 41 691 Receptor kinase-like Gene Family AT1G25390 44.597 9.55e-167 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tpr1g0330 Pkinase 1.6e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0330 1 2831210 2841422 Tpr1g0330 1 2831210 2841422 ECH