Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0324 ATGAACCAAAAACAACCCTTCTTCTTTCTCTTCTCTTCTCCCCTGATTTATTCATACATCACCCTTTTCTATTTTCTTACCAGAACCACTCTATGCTATTGCTATGTATATCCAAATTTTACAGCTTGTGAACCCAAAACATGTGGCAACCAAACAATAAGATACCCTTTCTACATCAAAGGAACACAAGAACCCTTTTGTGGTTACCCTGGTTTTGGTCTCTCTTGTAACAATACTATTGGTCTCCCATTCCTCAATCTTTCTAATACCTTTTACCCAATCCACCAAATTTTCTATCAAAGTCAATCATTAAGAGTGTCCAACAATGCTGTGACATATAGTTCAGACACCAACAAAGGTTGTCTTTCACCTAACAAGAACCTTACTATTCCAAAGGACATCTTCTATCTTGCTCCCAATCAAAGTGAAGTGAGATTGTTCTACGGATGCGACTCAACAAAGCTACCCAGAACGCTGCAAAGGAACACAATTGGTTGCTCTGCAGAAAATGAAACGAGTTCGGTTGTGGCATTATATGAGAATGATAAAAATGCAAGCTTTGTGTCAAAGAATTGCAGGGGTGAGGTGGTGAATGCGACAGTGGAAAATTATGTGAAAGGAGGGATTGAAGAGTCGCTGAGAAATGGGTTTTGGTTGAATTGGGTGGCTAGTGATTGTACTGAGTGCTACAACAGTGGAGGGAGGTGTGGTTTTAATTCACATATATATAGTTTCAGATGTTACTGTACTGATAGAGTTCATGCTGCAAAATGTGATCCAGTCGTGAAGTCCCGATCGGTGCATGTGACAATAGTGGCCTCAGTGGTTGGAGTTGCATTTGCCTTGCTGATTGTCTTAGTTTGTTGGTTTAGGAAAAAGATCTTCCCTCCCACATTTCTTATATTCAGGGAGGAGAATCCAACCCATCAAATTATTGAGAAGTTTTTGAAGGAGCATGGACCTCTTCCAGCTACTAGGTACAGTTATTCAGATATCAAGAAAATAACAAATTCTTTCAAACACAAACTAGGCCAGGGAGGGTATGGAAGTGTATACAAAGGAAAGTTACCCGATGAACGCATGGTTGCAGTGAAGATTTTAAGTGAATCAAAAGGTGATGGTGAAGATTTCATAAATGAAGTTGCGAGTATCAGTAGAACTTCGCATGTCAACATTGTTAGACTTTTGGGGTTTTGTTTGGATGGTTCTAAAAAGGCACTGATATACGAATTCATGCCTAATGGATCACTCGAGAAGTTCATATATGAAGAGAAAGATCCATTAAAGAATAATCGCCAATTGGATTGCAAAACATTATATGATATTACAGTTGGCGTTGCTCAAGGGTTAGAGTACTTGCACAAAGGTTGCAACACTAGAATCTTACATTTTGACATAAAACCCCATAATATATTACTAGATGATGATTTTTGTCCCAAAATTTCAGACTTTGGACTTGCTAAAATATGTCCAAGAAAAGAAAGCATTGTATCCATATTTGGCATGAGGGGAACACCAGGATATATTGCTCCAGAATTGTTCTCCAGAAATTTTGGTGGGGTGTCACATAAATCAGATGTTTATAGTTATGGAATGATGGTTTTAGAAATGGTTGGTCAAAAAAAGAATATCAAAGTTGAAGTTGATTGTTCTAGCGAGTTATATTTTCCACACTGGATTTACAAGCATCTTGAATTGAATCAGGATCTTGGACTCAAGTGTATTAAAAATGAAATTGATGAAGAAATGGTAAGAAAAATGACAGTGGTGAGTTTATGGTGCATACAAACTGACCCTACGCATCGACCAGCAATGCATAAAGTGGTGGAAATGCTGGAAGGGAGTCTTCGAGTGCTGGAAATACCACCCAAGCCCTTTCTGTCTTCTCCTTTAACATCTTCAATCCATTTATCATCTGAAACATCTTCAATCCATTTATTATCTGAAATATTGTAA 1956 0.3799 MNQKQPFFFLFSSPLIYSYITLFYFLTRTTLCYCYVYPNFTACEPKTCGNQTIRYPFYIKGTQEPFCGYPGFGLSCNNTIGLPFLNLSNTFYPIHQIFYQSQSLRVSNNAVTYSSDTNKGCLSPNKNLTIPKDIFYLAPNQSEVRLFYGCDSTKLPRTLQRNTIGCSAENETSSVVALYENDKNASFVSKNCRGEVVNATVENYVKGGIEESLRNGFWLNWVASDCTECYNSGGRCGFNSHIYSFRCYCTDRVHAAKCDPVVKSRSVHVTIVASVVGVAFALLIVLVCWFRKKIFPPTFLIFREENPTHQIIEKFLKEHGPLPATRYSYSDIKKITNSFKHKLGQGGYGSVYKGKLPDERMVAVKILSESKGDGEDFINEVASISRTSHVNIVRLLGFCLDGSKKALIYEFMPNGSLEKFIYEEKDPLKNNRQLDCKTLYDITVGVAQGLEYLHKGCNTRILHFDIKPHNILLDDDFCPKISDFGLAKICPRKESIVSIFGMRGTPGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGQKKNIKVEVDCSSELYFPHWIYKHLELNQDLGLKCIKNEIDEEMVRKMTVVSLWCIQTDPTHRPAMHKVVEMLEGSLRVLEIPPKPFLSSPLTSSIHLSSETSSIHLLSEIL* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0324 651 Pfam Wall-associated receptor kinase galacturonan-binding 43 107 IPR025287 GO:0030247
Tpr1g0324 651 SMART serkin_6 337 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0324 651 Gene3D Transferase(Phosphotransferase) domain 1 412 624 - -
Tpr1g0324 651 PANTHER - 34 648 - -
Tpr1g0324 651 PANTHER RUST RESISTANCE KINASE LR10-RELATED 34 648 IPR045874 GO:0004672
Tpr1g0324 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Tpr1g0324 651 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Tpr1g0324 651 ProSiteProfiles Protein kinase domain profile. 337 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0324 651 SUPERFAMILY Protein kinase-like (PK-like) 320 613 IPR011009 -
Tpr1g0324 651 Pfam Protein kinase domain 340 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g0324 651 Gene3D Phosphorylase Kinase; domain 1 314 411 - -
Tpr1g0324 651 Pfam Wall-associated receptor kinase C-terminal 170 251 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0324 Tpr-Chr1 2777292 2780375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0324 21 640 Receptor kinase-like Gene Family AT5G38260 40.498 4.49e-141 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tpr1g0324 Pkinase 4.3e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0324 1 2777292 2780375 Tpr1g0324 1 2777292 2780375 ECH