Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0310 ATGCCACCTTCAATTTCTTTGATGAACACCAATAGAACTATGTCTATAGCTATGTCCACAACTACAAAGAGAGAATTTGGTAACTCTAATGAAGAAAATGAGCTTAGAAGAGGACCATGGACTCTTGAAGAAGATAGTTTACTAATACAATATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGCTGCAGACTTAGATGGTTGAATTACTTGAAACCTGACATTAAGAGAGGGAATCTTTCTCCTCAAGAACAATTGTTGATCCTTGAACTTCATTCTAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTACCAGGAAGAACAGATAACGAGATAAAGAATTACTGGAGAACAAGGGTGCAAAAACAAGCGCGCCAACTTAACATTGAATCTGGTAGCAAGAGATTCCTTGATGCTGTTAAGTGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGAACAGAACACTTCACCAATCTCTGATCATTCTTCTATCACAAACATGAATAATTTTGGGAATTCTTTTGAAGCTTCAACTAGTACTAATAATTCAATCTCAACAAGCTTCAATGTTCCTTCTATATCTCCATCATCTCAAAATTCCTTCATAGATGCTTCAAGTGCAAATCATTTGAGTACCATGTCCAGCACCAACAACAATCCTTCTTTGGATTTCTTGCAATTTTCACAGCCACTTGAAATTTCCGAAAACTCGAAAAGTGCTCCAAATGTGTTAGACAACAATGTTTATAACTGTCCGATTCAGGAAAATTACTCTATTGATGATACCAATAACTATGGCTTTGAAGGTCTATACTTTGATCCACCTTCTTCAATGGAAACTTGTGACTTTTCACAGTTTGATTTTCAAACTTCAGGGAGTGGTTGGATGTTAGACAACATGGCTAATAGTACTTTGTGGAACATGGATGCTATGTGA 984 0.3709 MPPSISLMNTNRTMSIAMSTTTKREFGNSNEENELRRGPWTLEEDSLLIQYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLSPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFLDAVKCFWMPRLLQKMEQNTSPISDHSSITNMNNFGNSFEASTSTNNSISTSFNVPSISPSSQNSFIDASSANHLSTMSSTNNNPSLDFLQFSQPLEISENSKSAPNVLDNNVYNCPIQENYSIDDTNNYGFEGLYFDPPSSMETCDFSQFDFQTSGSGWMLDNMANSTLWNMDAM* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0310 327 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
Tpr1g0310 327 CDD SANT 94 133 IPR001005 -
Tpr1g0310 327 CDD SANT 39 84 IPR001005 -
Tpr1g0310 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Tpr1g0310 327 Gene3D - 34 90 - -
Tpr1g0310 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Tpr1g0310 327 Gene3D - 94 135 - -
Tpr1g0310 327 SUPERFAMILY Homeodomain-like 35 131 IPR009057 -
Tpr1g0310 327 SMART sant 89 137 IPR001005 -
Tpr1g0310 327 SMART sant 36 86 IPR001005 -
Tpr1g0310 327 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 17 325 - -
Tpr1g0310 327 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 325 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tpr1g0310 327 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Tpr1g0310 327 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Tpr1g0310 327 Pfam Myb-like DNA-binding domain 90 133 IPR001005 -
Tpr1g0310 327 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 52 61 IPR001345 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0310 Tpr-Chr1 2654316 2656196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0310 32 225 MYB Transcription Factor Family AT1G68320 61.111 3.08e-88 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g0310 Myb_DNA-binding 1.1e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0310 1 2654316 2656196 Tpr1g0310 1 2654316 2656196 ECH