Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0300 ATGAGACCACAAGGAAATCCATTAGATCTTAACAATTTGCCTGATGAATACTCTAGAGATCATGGTAAACAAGTTCTTGAAGACACTGATCCACCCGGTTGCATCAGGAAAAAGAAAAACGGCGGGAAGGATGGAAAAGAAGAGTGTGGGAAGGTTTATGAATGTAGATTTTGTTCTCTCAAGTTCTGTAAATCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAGGGAAACAGAGACGCTTAACCATGCTCGTCAGCTAGTCTTCCGTAACGATCATAACCAGCTTGCACCACAACCACCTCCCTCTCACCTAGTAGGATGTTGTCCACCACCACCAATAGCAACAGCAGGCTACATTCAAGCAAATAACATGGGAGATCCAACAATGCCTCTAAGATTCCCAAGATACTTCTCAGGCTCATCATCCTCAACACATATTCCTCCTCCACCACCGCCACCACCACAACCAACTCAACCTTATCTATACACTTCACCTTCACGGCCGGTGTCTTTTCCGACACATTTAATTCCTCAACATCCGATGAACGAATACCATGTCGGTCACGTGATGAGTAGCAGTCACCACCAGCAATATGGAGGACTGCAGCACATGAACTACGTTGCAGGCGGAGGTGGTGGTGGTGGTGAATCAAATTACACGTGCATAGGTGCACCGGTTGGACAAGGTTTTGTTCCGGGAAGTGGTGGCGCCGAGAAAGGTCAAAATCATCATCATCAACAACATCAGGATCAAGATGGAACAAGTTTGAATTGGGGAAGGAGCACTTATTCAGCTGGAACACAGCATCGTTTGGATACTCATAATAATTCATCGATCAATCGGTTTCAAGATGGTTTCTAA 873 0.4593 MRPQGNPLDLNNLPDEYSRDHGKQVLEDTDPPGCIRKKKNGGKDGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHNQLAPQPPPSHLVGCCPPPPIATAGYIQANNMGDPTMPLRFPRYFSGSSSSTHIPPPPPPPPQPTQPYLYTSPSRPVSFPTHLIPQHPMNEYHVGHVMSSSHHQQYGGLQHMNYVAGGGGGGGESNYTCIGAPVGQGFVPGSGGAEKGQNHHHQQHQDQDGTSLNWGRSTYSAGTQHRLDTHNNSSINRFQDGF* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0300 290 Gene3D Classic Zinc Finger 36 102 - -
Tpr1g0300 290 PANTHER ZINC FINGER PROTEIN JAGGED 1 253 IPR045320 GO:0003700
Tpr1g0300 290 SUPERFAMILY beta-beta-alpha zinc fingers 51 81 IPR036236 -
Tpr1g0300 290 MobiDBLite consensus disorder prediction 1 41 - -
Tpr1g0300 290 MobiDBLite consensus disorder prediction 270 290 - -
Tpr1g0300 290 MobiDBLite consensus disorder prediction 14 41 - -
Tpr1g0300 290 MobiDBLite consensus disorder prediction 240 259 - -
Tpr1g0300 290 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Tpr1g0300 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Tpr1g0300 290 PANTHER ZINC FINGER PROTEIN JAGGED 1 253 IPR031113 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0300 Tpr-Chr1 2539934 2542636 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0300 4 233 C2H2 Transcription Factor Family AT1G13400 40.928 2.83e-30 111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0300 1 2539934 2542636 Tpr1g0300 1 2539934 2542636 ECH