Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0294 ATGAAATTGAGTTGCAATGGGTGTCGTGTACTTCGCAAAGGATGCAGCGAAGACTGCATCATCAAGCCTTGCCTTGAGTGGATCAGTTCCGCTCAAGCCCAAGGCCATGCCACCCTCTTCCTTGCCAAGTTCTATGGTCGAACAGGCTTGCTCAACCTCCTTGCTAACGCTCCCAATCAAAATGCCGAAGCTGTGTTCAAGTCATTGTTGTACGAGGCTGCTGGTAGATTGGTGAATCCCACATATGGGGCACTAGGTTTATTTTGGACAGGACAATGGAGTCGATGTGAAGCTGCAGTTGAATCTGTTCTGACCAGATCAAATATTAATGATGTTATAGCTGTTGATGGACAAACATCATCAGGAACACTCATTGCTGAAAATCATGTTCTTCCAACAAACTCTGATATACGCCATGTGGCAAGAGGTACCAATGTGGACATCAAAGAGAAGACTCAATTCAAGAGAGCTGGATCAATTTTCAAGCCTAAGCCGCGAATTGGTTTGGCCAACAATGCTACACTTTTGAAATCAATTTTGGAGAATGACACTGTGACAACTGTTGAGACTTCATCAATGATTGAGAACGAGATGAATGAAACCGCTGCAACTCAAGTGAACTTGGAACTCACTCTTGGCTTCAATTGCCAATCAAGCAATGGCAAAAAAATCATATGA 678 0.4366 MKLSCNGCRVLRKGCSEDCIIKPCLEWISSAQAQGHATLFLAKFYGRTGLLNLLANAPNQNAEAVFKSLLYEAAGRLVNPTYGALGLFWTGQWSRCEAAVESVLTRSNINDVIAVDGQTSSGTLIAENHVLPTNSDIRHVARGTNVDIKEKTQFKRAGSIFKPKPRIGLANNATLLKSILENDTVTTVETSSMIENEMNETAATQVNLELTLGFNCQSSNGKKII* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0294 225 PANTHER LOB DOMAIN PROTEIN 1 224 - -
Tpr1g0294 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 224 - -
Tpr1g0294 225 Pfam Lateral organ boundaries (LOB) domain 4 105 IPR004883 -
Tpr1g0294 225 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0294 Tpr-Chr1 2478336 2479723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0294 1 155 AS2 family AT1G67100 51.923 1.13e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr1g0294 LOB 4.2e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0294 1 2478336 2479723 Tpr1g0294 1 2478336 2479723 ECH
Tpr1g0294 1 2478336 2479723 Tpr2g0124 2 1730118 1731965 ECH