Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0293 ATGAGTTGTTCAAGTAAGAAAGCTGCAAACGCAGTTGGAGGCAAAACTGCTAGAGCTTGTGACAGTTGCATAACAAAGAGAGCACGTTGGTATTGTGCTGCTGATGATGCTTTTCTATGTCAAGCTTGTGACTCTTCAGTTCATTCAGCTAATTCCTTAGCTAGAAGACATGAAAGAGTTCGTTTGAAAACGGCGTCGTTTAAGTCCATCGGTGGCGACGATGAATTCAACAATTCCGGTCCTTTTTCCGGCTTCACAAAGAAAGCAAGAACGCCGAGACAAGGGAAAAACAAATCATCGCCGAGTAATGAGCCGGCGAGGAATAATAATAATAATCCGTTCCATCTTGTTCCGGAGATGGGTTTCGATGAAGTGAATTCACTTTCACATGATGAAAATGAGGAGCAACTTCTTTATAGGGTACCGATTTTCGATCCTTTTGTTGCTGAATTATGTAGTACTAGTCCTCCTTCAGTTGGTTCAAGTGAAGGAGAACTAGGAACTATAACTATTGCTTCTGATACTTTCGCTCCTGATACTAAAAACATCAGAAGCGAAAACAGAAGTAGTAGTAACAATTATGAGATGGAAAGCTTTCACGGGCTTCTTCCATCTGATATTGAATTAGCCGAATTTGCAGCCGATGTTGAGAGTTTATTGGGTAGGGGACTAGAAAATGAGTGTATAGGGATGGAAGAGTTAGGATTGATTGATACAAAAAATGAGAAGGATAGGGAGTGGGAGTGTATTGGGAAAGTGAAGGAAGAAAGTGAAGAGAGCCATGAAGTTGTAGAGGTAGATAATATAGAGATGATGGGAAAAGAGTCTTCATTTGAATTGAATTTTGATTATGATGAATCTCATGAAACATGTGAAGAGGTGAAGGGTAAGGTTGGTTTGGATATAGAACAAAATGAAAATAATAATTGTAATAAGGGGAAGAGGAAAATATCTTTGCAGCTAGACTATGATGCAATAATCATTGCATGGGATAGCCAAAAGTGTCCATGGACTAATGGTGACAAACCAAATTTGGATGCTGATGAGACCTTGCTTGATTGCATGGGAACTTATGGAACAGAAGTTAATTATCCTTATGGTGAATTTGGTGGATATGGATATAATCCAGTAATGGTAGATGGAGGAAGAGAGGCAAGAGTTTCAAGGTACAGAGAAAAGAGAAGAACAAGGTTGTTTTCTAAGAAAATAAGGTACGAGGTTAGGAAATTGAATGCAGAAAAGAGACCAAGAATGAAAGGAAGATTTGTAAAGAGGGCTTCTTTTGCAGTTCCAACATTTCCTTTGTTAAAATAA 1314 0.3874 MSCSSKKAANAVGGKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANSLARRHERVRLKTASFKSIGGDDEFNNSGPFSGFTKKARTPRQGKNKSSPSNEPARNNNNNPFHLVPEMGFDEVNSLSHDENEEQLLYRVPIFDPFVAELCSTSPPSVGSSEGELGTITIASDTFAPDTKNIRSENRSSSNNYEMESFHGLLPSDIELAEFAADVESLLGRGLENECIGMEELGLIDTKNEKDREWECIGKVKEESEESHEVVEVDNIEMMGKESSFELNFDYDESHETCEEVKGKVGLDIEQNENNNCNKGKRKISLQLDYDAIIIAWDSQKCPWTNGDKPNLDADETLLDCMGTYGTEVNYPYGEFGGYGYNPVMVDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVPTFPLLK* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0293 437 MobiDBLite consensus disorder prediction 95 109 - -
Tpr1g0293 437 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Tpr1g0293 437 SMART bboxneu5 15 62 IPR000315 GO:0008270
Tpr1g0293 437 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 4 430 - -
Tpr1g0293 437 CDD Bbox1_BBX-like 19 62 - -
Tpr1g0293 437 MobiDBLite consensus disorder prediction 80 109 - -
Tpr1g0293 437 ProSiteProfiles CCT domain profile. 383 425 IPR010402 GO:0005515
Tpr1g0293 437 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 4 430 - -
Tpr1g0293 437 Pfam CCT motif 383 425 IPR010402 GO:0005515
Tpr1g0293 437 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0293 Tpr-Chr1 2470267 2472128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0293 6 425 C2C2-CO-like Transcription Factor Family AT1G25440 45.330 1.85e-101 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tpr1g0293 zf-B_box 9.8e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0293 1 2470267 2472128 Tpr1g0293 1 2470267 2472128 ECH