Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0292 ATGCCTCCAATCTTGCCTGATTTCTCTAGCTCAGTTAAGCTCAAATATGTCAAACTTGGTTATCAATATCTTGTTAATCACATTATCACTCTCACTCTTATTCCAATTATGATTGGTGTTACCATTGAATTAATACGTTTAGGTCCAAATGAAATCCTTAACCTTTGGAATTCATTAAACCTTAACCTCGTACAAATCCTATGTTCTTCTTTTCTTGTCATCTTCATAGCCACTGTTTATTTCATGTCAAAACCAAGAACAATTTACCTCGTTGACTATGCTTGTTTCAAACCACCTGTTACTTGTCGTGTTCCTTTTGCTACTTTCATGGAACATTCAAGACTTATCCTTAAAGATAATCCCAAAAGTGTTGAATTTCAAATGAGGATTCTTGAACGTTCTGGTCTTGGTGAAGAAACTTGTTTACCACCTTCAATTCATTATATTCCACCTAAACCAACCATGGAATCAGCTAGAGGTGAAGCTGAACTTGTTATTTTCTCAGCCATGGATTCATTGTTCGAAAAAACCGGTCTTAAACCGAAAGACATAGACATTCTCATAGTAAATTGTAGCTTATTTTCACCAACACCTTCTTTGTCTGCTATGGTTATCAACAAATATAAACTCAGAAGTAACATCAAAAGTTTCAATCTTTCTGGAATGGGCTGTAGTGCTGGTCTCATTTCGATCGATTTAGCTCGCGATCTTCTTCAAGTTCATCCAAATTCAAATGCTGTTGTTGTAAGCACAGAGATTATAACACCAAATTATTACCAAGGAAAAGAAAGAGCTATGCTTTTACCAAATTGTTTATTCAGAATGGGTGGTGCTGCAATTATGTTATCAAACAGAACAACAGAGAAAAGAAGATCAAAATACAGGTTAGTTCATGTTGTTAGAACACATAAAGGAGGTGATGATAAAGCATATAAATGTGTATATGAAGAAGAAGATAGAGAGGGTAAAGTTGGTATTTCACTACAAAAGGATCTTATGGCAATTGCAGGTGAAGCTTTGAAATCAAATATAACAACAATGGGTCCTCTTGTATTACCAGCTTCAGAACAGTTACTATTTTTGATAACATTAATAGGTAGAAAAATTTTCAATCCAAAATGGAAACCATATATTCCTGATTTCAAACAAGCATTTGAACATTTTTGTATACATGCTGGTGGTAGAGCTGTGATTGATGAATTACAGAAGAATCTTCAATTATCAACAGAACACGTGGAAGCTTCAAGGATGACACTTCATAGGTTTGGTAATACATCTTCATCATCACTATGGTATGAACTTAACTACATTGAATCAAAAGGTAGGATGAAGAAAGGTGACAGAGTATGGCAGATAGCATTTGGCAGTGGTTTTAAATGTAACAGTGCTGTTTGGAAATGTAACAGAAGTATTAAGACACCTATTGATGGTCCTTGGGCAGATTGCATTGATCGTTACCCAGTTCATATTCCTGAGATTGTTAAACTCTAG 1491 0.3488 MPPILPDFSSSVKLKYVKLGYQYLVNHIITLTLIPIMIGVTIELIRLGPNEILNLWNSLNLNLVQILCSSFLVIFIATVYFMSKPRTIYLVDYACFKPPVTCRVPFATFMEHSRLILKDNPKSVEFQMRILERSGLGEETCLPPSIHYIPPKPTMESARGEAELVIFSAMDSLFEKTGLKPKDIDILIVNCSLFSPTPSLSAMVINKYKLRSNIKSFNLSGMGCSAGLISIDLARDLLQVHPNSNAVVVSTEIITPNYYQGKERAMLLPNCLFRMGGAAIMLSNRTTEKRRSKYRLVHVVRTHKGGDDKAYKCVYEEEDREGKVGISLQKDLMAIAGEALKSNITTMGPLVLPASEQLLFLITLIGRKIFNPKWKPYIPDFKQAFEHFCIHAGGRAVIDELQKNLQLSTEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKKGDRVWQIAFGSGFKCNSAVWKCNRSIKTPIDGPWADCIDRYPVHIPEIVKL* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0292 496 PANTHER 3-KETOACYL-COA SYNTHASE 5-RELATED 6 495 - -
Tpr1g0292 496 Pfam FAE1/Type III polyketide synthase-like protein 80 368 IPR013601 GO:0006633|GO:0016020|GO:0016747
Tpr1g0292 496 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 384 466 IPR013747 -
Tpr1g0292 496 CDD CHS_like 73 465 - -
Tpr1g0292 496 SUPERFAMILY Thiolase-like 73 291 IPR016039 GO:0016746
Tpr1g0292 496 PIRSF Very_long_ch_3-ktacl-CoA_syn 7 496 IPR012392 GO:0006633|GO:0016020|GO:0016747
Tpr1g0292 496 SUPERFAMILY Thiolase-like 297 467 IPR016039 GO:0016746
Tpr1g0292 496 Gene3D - 116 466 IPR016039 GO:0016746
Tpr1g0292 496 PANTHER 3-KETOACYL-COA SYNTHASE 6 495 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0292 Tpr-Chr1 2450982 2452988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0292 5 496 Miscellaneous Gene Families AT1G25450 81.707 0.0 876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0292 1 2450982 2452988 Tpr1g0292 1 2450982 2452988 ECH