Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0291 ATGATGATGGGTTCTAGGAAATCTAGAGCCAAACCAAGGCCTCAACCTTTGAAAGAATCCAAGTTGATGACAAGAAATTTGCGCATAGTTTTTGATGATCCTGAAGCAACTGATTCCTCCGAAGATGAGTCAAACCAATCAACAAGAATCAGAAGAAGCATCATTGATGTTCCTATCCCTCCTGTTGTTTCTGCAGTATTATCTCAAAACAGTTGCTCTGAGAAGCCAAAGATTGCAACTGCAACAAGGAAGAAGAAAACGTGTCTTTCACCACAATCTCAAACCAAGAAGAAGGTTGTTTCATCAACACCAACAACTGCTGCAGCAGTAACAAGAGGGGGACAATCTTCGGCCAGATACAGAGGCGTTCGTATGCGAAAATGGGGGAAATGGGCCGCGGAGATTCGTGATCCTTTCAAAGGTGCTAGAATCTGGTTGGGAACTTACAACACTGCTGAAGAAGCTTCTCAAGCTTATGAATCCAAAAAGCTTCAATTTGAAATGATGGAAGCCGAAATGGCTGCAGGAACACGCCTCAAGGGTGGTACTGGTTCTTCTGCTGCAGCCACTCGAGCTTCTGCTGCTGCTTCAAACAACAATTATTCTGCCGATGCTGCTAATGCGTCTATGTCGGAGAAATTCTCGACAACTACTGAAGACTCTCATAGCTTATTCTCACATGGATCGCCTTCTTCTGTGCTTGAATTGGATACCTTAGCATCATCCAATATGGTTGAGAAGGTTGATGTTCCATCGGTCAACAACGGAGCTGCTGCTGAAGGCGAAGCGACTGAAATGGTGGTTTGTCAACTTGAAGAGCTAGAAATTCCAGATCTGAGTCTTTTGAACTTGCCCGAGCCACCCGTTGCTGCTGCTGCAGAGAATCCTATTGGGACTGATCCCAATCTTGGTTTTGGATTCGATTTTGATCGGTTTAACATCGATAATTTTGATCTTGGTTATGATGATTTTGATGATGACCTTGGCGACTTAAGGGATCTTCACATTCATGGATTTGATGACAATGTGCCTAGTGAGCTTCCTGATTTTGATTTTGCTGCTGATGATGAAGAATTTACTGCTTGGTTTGAGGAACCCCTCCAACACAACATGCCTTGTCCCAAAGTTTTGTAG 1134 0.4374 MMMGSRKSRAKPRPQPLKESKLMTRNLRIVFDDPEATDSSEDESNQSTRIRRSIIDVPIPPVVSAVLSQNSCSEKPKIATATRKKKTCLSPQSQTKKKVVSSTPTTAAAVTRGGQSSARYRGVRMRKWGKWAAEIRDPFKGARIWLGTYNTAEEASQAYESKKLQFEMMEAEMAAGTRLKGGTGSSAAATRASAAASNNNYSADAANASMSEKFSTTTEDSHSLFSHGSPSSVLELDTLASSNMVEKVDVPSVNNGAAAEGEATEMVVCQLEELEIPDLSLLNLPEPPVAAAAENPIGTDPNLGFGFDFDRFNIDNFDLGYDDFDDDLGDLRDLHIHGFDDNVPSELPDFDFAADDEEFTAWFEEPLQHNMPCPKVL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0291 377 SMART rav1_2 119 173 IPR001471 GO:0003700|GO:0006355
Tpr1g0291 377 Coils Coil 152 172 - -
Tpr1g0291 377 MobiDBLite consensus disorder prediction 1 52 - -
Tpr1g0291 377 CDD AP2 118 159 IPR001471 GO:0003700|GO:0006355
Tpr1g0291 377 Gene3D AP2/ERF domain 118 174 IPR036955 GO:0003700|GO:0006355
Tpr1g0291 377 SUPERFAMILY DNA-binding domain 119 166 IPR016177 GO:0003677
Tpr1g0291 377 Pfam AP2 domain 119 166 IPR001471 GO:0003700|GO:0006355
Tpr1g0291 377 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Tpr1g0291 377 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Tpr1g0291 377 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 7 357 - -
Tpr1g0291 377 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 7 357 - -
Tpr1g0291 377 ProSiteProfiles AP2/ERF domain profile. 119 180 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0291 Tpr-Chr1 2427473 2429211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g0291 25 353 AP2-EREBP Transcription Factor Family AT1G68550 31.420 1.03e-26 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr1g0291 AP2 1.9e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0291 1 2427473 2429211 Tpr1g0291 1 2427473 2429211 ECH