Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g0248 ATGTATCAGAAGACAATTCCCATGGCTACTGCCACCGCCGCCACAACGCGGTGGCCGACTCAGCCAACTCAGTGGACTCGTGAAGATGACAAGCTTTTCGAGAGAGCTCTTTTGATGGTACCGGAAGATTTACCTAACCGGTGGGAAAAGATCGCTGAACAAGTTCCCGGTAAGTCTGTGGCGGAAGTTAGGGATCACTATGAGGATTTGGTACATGATGTGTTGGAAATTGAATTAGGTCGGGTTGAGGTTCCGAGCTATCCTGATGACTTGGCGGCGGTGAGTGGTGGTGGTGGCGGTGGATTGTCTGATTGGGATTCTTCGAATCAAATATCGTTTGGTTCAAAGAATAGAAATAGTGATAACGAGAGGAAGAAGGGAACACCGTGGACTGAAGAAGAACACAGGCTGTTTCTTGTTGGGCTTACCACATATGGCAAAGGAGATTGGAGAAGTATTTCAAGAAATGTTGTCGTGACAAGAACACCGACACAGGTTGCAAGTCATGCTCAGAAGTACTTTCTTCGCCAGAGTGCAGTGAAGAAAGAGAGGAAAAGATCAAGCATTCACGACATTACATCGGTAGACACTAATAAAGCTCCGATGCCTATTGATCAGAACTGGGTTCCTCCTCCCGGTGGTCAGCCTCAACAAAATCATCATTACCCCTCGAACAATTTGCATGATCAAATGGGTTCATTTGGGTATTCAAACTATGGATTTTAA 726 0.4601 MYQKTIPMATATAATTRWPTQPTQWTREDDKLFERALLMVPEDLPNRWEKIAEQVPGKSVAEVRDHYEDLVHDVLEIELGRVEVPSYPDDLAAVSGGGGGGLSDWDSSNQISFGSKNRNSDNERKKGTPWTEEEHRLFLVGLTTYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQSAVKKERKRSSIHDITSVDTNKAPMPIDQNWVPPPGGQPQQNHHYPSNNLHDQMGSFGYSNYGF* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g0248 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 178 IPR017930 -
Tpr1g0248 241 SMART sant 126 176 IPR001005 -
Tpr1g0248 241 SMART sant 21 73 IPR001005 -
Tpr1g0248 241 CDD SANT 25 71 IPR001005 -
Tpr1g0248 241 Pfam Myb-like DNA-binding domain 24 69 IPR001005 -
Tpr1g0248 241 Pfam Myb-like DNA-binding domain 129 174 IPR001005 -
Tpr1g0248 241 MobiDBLite consensus disorder prediction 102 117 - -
Tpr1g0248 241 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 241 IPR043363 -
Tpr1g0248 241 ProSiteProfiles Myb-like domain profile. 122 174 IPR001005 -
Tpr1g0248 241 ProSiteProfiles Myb-like domain profile. 25 71 IPR001005 -
Tpr1g0248 241 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 125 177 IPR006447 GO:0003677
Tpr1g0248 241 ProSiteProfiles SANT domain profile. 20 67 IPR017884 -
Tpr1g0248 241 SUPERFAMILY Homeodomain-like 23 76 IPR009057 -
Tpr1g0248 241 Gene3D - 20 84 - -
Tpr1g0248 241 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 20 241 - -
Tpr1g0248 241 MobiDBLite consensus disorder prediction 92 129 - -
Tpr1g0248 241 ProSiteProfiles SANT domain profile. 125 178 IPR017884 -
Tpr1g0248 241 SUPERFAMILY Homeodomain-like 124 178 IPR009057 -
Tpr1g0248 241 CDD SANT 129 174 IPR001005 -
Tpr1g0248 241 Gene3D - 128 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g0248 Tpr-Chr1 2016611 2018883 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g0248 Myb_DNA-binding 2e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g0248 1 2016611 2018883 Tpr1g0248 1 2016611 2018883 ECH