Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc91153g00004 ATGAGTGGTGCTGGGGACATGTCTGATAAGGATCCGGGTATCATGCTCTTTGGCATGAAGATTCCTTTGCAGGAGTTTCAGATTCCTGCAGCCACCTCTCAAATGGGTTGTCAAATTCAGGCAAACTTTGCAGCCATGAATCCTTGTAGCAGCATGAAGAAAACAGAAGTAGAAACTGACTCTGCTCAAAACTCTGAGCAATCAAAGAATACTTGTGGTTTAAGCCAGGATACCAAACAAGAATCCAAGAACAATGAGCAAGGAAACGAGCTAAAGCCGAATTCGAAGCCTTTGGAGGATAACGAGGAGAGTAGTAGTAACACAGATCAAGAAAAAAGTTTCAAGAAACCAGACAAGATTCTTCACTGTCCACGCTGCAACAGTTTGGAGACAAAGTTTTGTTATTTCAACAACTACAATGTCAATCAACCCCGGCATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGTACAATGAGGAATGTTCCGGTGGGAGCCGGTAGACGGAAGAACAAGCACCTAGCCTCTCAATTCCGGCACATTATAGTAGCCTCCGAGGGAGCTTCGGTCGCAAGGTTAGAAGCAAAAGATCACTCATCTACAGACAATAGTGCTGTATTGAAATTCAGTCCGGATGTCCCTCTCTGCGAATCCATGGAGTCAATGCTTAATCTCCGAGACCAGAAAGCAAGTGGTGAACCAGCAAGATCATTGAGTTCTGCAGAGAATCATGATCAGCAAGAATTATCCTTTTGTGCATCATCATCATCATCATCATCAGTGGCGAATTCTTGTAATGCTGGAAATGAATCATTAGAGCAAAAGTGCAACTATCCTGTTCCTCCTCCATGGATATTTTCTTGGAATCCAGGTTGGAACAATGGTGGTTCCATGATGGCAGTCCATCAATCTCCGGCCGCAATGCAGTGGTGTCCTGCAACAATAATGGGAGTTCCAACCGTTTCTCCACAAAAAATTCCATTGCAATTTGTTCATGGATCCTACTGGAATGGAACACCAGTGTGGCCTGCACAAAATGGTTGCCTTTCACCATCTTCCACCACTACAAGTAACAGTTGCTGCTCCGGCAATGGCGCCTCCCCGGCTCTCGGAAAACACACCAGAGATAATAGTGTCTTCATGGAAGAAGAAGAGAAGTCAGAGATATGTGTTTTGGTTCCAAAGACACTTAGAATTGATGGGCCAAATGAGAAGGCTTCAACAAGAAGTATGATGAAGCATGATAAGCACTTGTGTGAATCAGAAAATGGTGGTTTGAAAAAAGAACAAGGCAATGAGCGTGTGTTATGTGTGTCTCAAGTCTTGGAAGCTAACCCTGCAGCAGTTTCTCGTGCTCATGCATTTCAGGAGAGCACGTGA 1386 0.4444 MSGAGDMSDKDPGIMLFGMKIPLQEFQIPAATSQMGCQIQANFAAMNPCSSMKKTEVETDSAQNSEQSKNTCGLSQDTKQESKNNEQGNELKPNSKPLEDNEESSSNTDQEKSFKKPDKILHCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQFRHIIVASEGASVARLEAKDHSSTDNSAVLKFSPDVPLCESMESMLNLRDQKASGEPARSLSSAENHDQQELSFCASSSSSSSVANSCNAGNESLEQKCNYPVPPPWIFSWNPGWNNGGSMMAVHQSPAAMQWCPATIMGVPTVSPQKIPLQFVHGSYWNGTPVWPAQNGCLSPSSTTTSNSCCSGNGASPALGKHTRDNSVFMEEEEKSEICVLVPKTLRIDGPNEKASTRSMMKHDKHLCESENGGLKKEQGNERVLCVSQVLEANPAAVSRAHAFQEST 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc91153g00004 461 MobiDBLite consensus disorder prediction 55 92 - -
Stsc91153g00004 461 ProSitePatterns Zinc finger Dof-type signature. 123 159 IPR003851 GO:0003677|GO:0006355
Stsc91153g00004 461 ProSiteProfiles Zinc finger Dof-type profile. 121 175 IPR003851 GO:0003677|GO:0006355
Stsc91153g00004 461 PANTHER CYCLIC DOF FACTOR 2 9 461 IPR045174 GO:0003700|GO:0006355
Stsc91153g00004 461 MobiDBLite consensus disorder prediction 55 115 - -
Stsc91153g00004 461 MobiDBLite consensus disorder prediction 93 115 - -
Stsc91153g00004 461 Pfam Dof domain, zinc finger 118 175 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc91153g00004 Stsc-Chr91153 26123 28563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc91153g00004 11 461 C2C2-Dof Transcription Factor Family AT5G39660 33.728 2.62e-61 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc91153g00004 zf-Dof 6.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc91153g00004 - - aip:107621760 578.17