Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc651g00001 ATGATGAGAAACAATGAGCAGCAGCAGTTCAAAGATTATTCAGCTCTTAGGATGATCTTCTCATTATTGTGCTACCTAATAATTGTAGTAGGTGTAGTTGAAACAAAATCAACAATAGAACCATGCAACTCCACAAAACCATGCCCTTCACTCCTCTCATACCTCTTGCCATGTGACTCAATGCTATCCGAGATAGCAACCCGCTTCAACGTCAACGTCTCTGATATCATGGCCGCAAACTCTGCCTTCCCAATAACACCATCGTGCGACAGCGAGATCGTCAGAGCAGGATCAACGGTCAAGATACCAGCCACGTGTGAGTGCGTGGACGGAATCAGAAGGTCGGTCTCAGCAGTCTACAGAGTGGAGGCATCAGACACACTGGAATCGATATCACAAGGTTATGGAGGGCTCGTTAGTGCAGATCAAATTCGGAGTGTCAACAATGGCATGCCTTTGCTTGATGGAGACGTGGTAGTCATACCCTTGCCCTGCAGCTGCATGAAGAACAAGAACAATGGCAGAAGGGTGGTTTATATGTCTTATGTGGTTCAGAAAGGGGAGACATTGGAAAGTGTGGCCTCATATTTTGGTACAACTCTTTCTGATTTGGAATCTGTAAACGGCCTTGGACAACCTACCCTTCTACCTGGTGATATTTTATACATCCCTATTCCAGCTACTCTGAATTGGTACAATGAGAGGTTGATGGTCCCAAATGGTTCTTATGCTTTAACTGCCAACAACTGTATTAAATGCACTTGTTCTCCGAACGATCTCAAGATGCAGTGTTTTCCTTCTGGAATGGATGTACCTTGCTATAATTTACGTTGCAAGGGGTCCAATCTTGCTATTGGGGATGAACATCTGGAATATTCCAATGCTGGATGCAATGTCACCCAATGTGTGTACCGTGGCCATAAGGGTGGAAAAATTCTGAGTAGTCTGATCAACTCTTCTTACCTGCAATGCCCGGATAATATAAGCTCTAGTGGAGCAAAATGTTGGCCACCCTCAGCACCATATTTTGAAGGCCCATTTGTTTTGTCTCCAAGCCCAAGCCCAACTCTATTCCCCTTGCCTGTTTCTGAGGCTGCTTTGATGACTCGAGCCTTTGACTATGAGAGAAGGCTCCATCTATTTTCATTCATCTATAATAATATGCTGCTCTTGTTCTTCCCAATGATTCTCCTTTGTTTATTAATGTGA 1209 0.4417 MMRNNEQQQFKDYSALRMIFSLLCYLIIVVGVVETKSTIEPCNSTKPCPSLLSYLLPCDSMLSEIATRFNVNVSDIMAANSAFPITPSCDSEIVRAGSTVKIPATCECVDGIRRSVSAVYRVEASDTLESISQGYGGLVSADQIRSVNNGMPLLDGDVVVIPLPCSCMKNKNNGRRVVYMSYVVQKGETLESVASYFGTTLSDLESVNGLGQPTLLPGDILYIPIPATLNWYNERLMVPNGSYALTANNCIKCTCSPNDLKMQCFPSGMDVPCYNLRCKGSNLAIGDEHLEYSNAGCNVTQCVYRGHKGGKILSSLINSSYLQCPDNISSSGAKCWPPSAPYFEGPFVLSPSPSPTLFPLPVSEAALMTRAFDYERRLHLFSFIYNNMLLLFFPMILLCLLM 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc651g00001 402 Gene3D LysM domain 165 230 IPR036779 -
Stsc651g00001 402 Gene3D LysM domain 58 108 IPR036779 -
Stsc651g00001 402 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 21 325 - -
Stsc651g00001 402 Pfam LysM domain 182 224 IPR018392 -
Stsc651g00001 402 Pfam LysM domain 120 149 IPR018392 -
Stsc651g00001 402 Pfam LysM domain 62 103 IPR018392 -
Stsc651g00001 402 SUPERFAMILY LysM domain 180 225 IPR036779 -
Stsc651g00001 402 CDD LysM 181 223 IPR018392 -
Stsc651g00001 402 CDD LysM 119 150 IPR018392 -
Stsc651g00001 402 SMART LysM_2 181 224 IPR018392 -
Stsc651g00001 402 SMART LysM_2 62 103 IPR018392 -
Stsc651g00001 402 SMART LysM_2 119 162 IPR018392 -
Stsc651g00001 402 CDD LysM 62 102 IPR018392 -
Stsc651g00001 402 ProSiteProfiles LysM domain profile. 180 223 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc651g00001 Stsc-Chr651 9202 10959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc651g00001 17 359 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 38.525 1.85e-73 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc651g00001 - - gmx:100819382 453.751