Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc61484g00007 ATGTCGGAAGTTGTTGCAAAGGACCCTGCGATTAAGCTCTTTGGGAAGACGATACCGGTGCCGGAGATTCCTCCCGGATCCGGCGACCTCACCGGACCTTCGGTACTATTGTCCGGTGATGCTGCTGATGACAGTGTTGATCAGAATAACGCCTCTTCCACGAACTCCAGCAGCAGCAGCGATGCACATGAGCTAGAAGAAATTGATAACAAGGATACACCGGGAAATAAACCAACTGATGGAAAGAAGGAAGAAGCAGCACCAACGCATTCATCGGAAATTGCTAATCCAGATACTGGGACTGGTGAAGAATCCATTAGCCCGTCCACCGAAAAGGAAGCCATGGCCTTGAAAACTTCCAAGAACGAAGAAGAACAATCGGAGACAAGTAATTCACAGGATAAGACCCTCAAAAAGCCAGACAAAATTCTGCCGTGCCCCCGTTGTAATAGCATGGACACCAAGTTTTGTTACTACAACAACTATAACGTCAACCAACCCCGCCACTTCTGCAAGAATTGTCAGAGATACTGGACTGCTGGCGGAACCATGAGGAACGTGCCTGTAGGTGCCGGTCGCAGGAAGAACAAGAACTCTGCTTCTCACTATCGACAGATAACTGTCCCTGAAGCAGCAATGCTGCAAAATAACATGAAAGACTTGCCAAATGGAGTCCATCATCCTCCTTTGATGTGCAACGGCACAGTCCTTACATTTGGGTCTGATGCACCCTTGTGCGAGTCAATGGCATCTGTTTTGGACCTTTCTGAAAAAGCTGCACAAGATTACATGAGGAATGGATTTGCTAAGCCTGAAGAGCTAAGAATTCGGGTTCCCGGCGCGAGTGGAGAGAAAGGGGACAATCAATCCAATAAATCTTCAGTTAACTCTGCAAAACCAATGGGAGGTATAACCAACAGTGGCTCCCAAGAAAAATCTATGCAGAATGGTCACAGCTTCACACAACAAATTCCTTACTTTCCCGGGCCCCCTTGGCCTCTCCCTTGGAATCCGGTGCAGTGGAACTCTTCGGTGCCACCACCTGCTTTTTGCGCACCAGGATTTGCCATGCCTTTCTATCCCGCAACAGCTTATTGGGGTGTCTCAGGTGCATGGAACATGCCATGGCTAGCACAACCATCATCACCTAAAGCTGCAGCCACAAACTCTGGGCCTAACTCCCCAACCTTGGGCAAACATTCAAGAGAAGAAAACATGTTTAAATCAAATGAGCCGGGTGGTGTGAATGAAGACAAACAAAGCAAAGAGAATCATAAAGAAAAGTGTCTTTGGGTTCCAAAAACACTAAGAATTGATGATCCGGAAGAAGCAGCAAAAAGTTCTATATGGACTACGCTCGGAATCAGACATGATAAGGATGACTCAGTTCTTGGGGAAGGACTCTTCAAACCATTCCCTTCGAAGTACCACGAAAAGAGTCATCCGATGCATGCCTCACCCGTATTGCAGGCCAATCCAGCAGCATTGTCTAGGTCACTAAACTTTCATGAGACTTCATAA 1521 0.4721 MSEVVAKDPAIKLFGKTIPVPEIPPGSGDLTGPSVLLSGDAADDSVDQNNASSTNSSSSSDAHELEEIDNKDTPGNKPTDGKKEEAAPTHSSEIANPDTGTGEESISPSTEKEAMALKTSKNEEEQSETSNSQDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRQITVPEAAMLQNNMKDLPNGVHHPPLMCNGTVLTFGSDAPLCESMASVLDLSEKAAQDYMRNGFAKPEELRIRVPGASGEKGDNQSNKSSVNSAKPMGGITNSGSQEKSMQNGHSFTQQIPYFPGPPWPLPWNPVQWNSSVPPPAFCAPGFAMPFYPATAYWGVSGAWNMPWLAQPSSPKAAATNSGPNSPTLGKHSREENMFKSNEPGGVNEDKQSKENHKEKCLWVPKTLRIDDPEEAAKSSIWTTLGIRHDKDDSVLGEGLFKPFPSKYHEKSHPMHASPVLQANPAALSRSLNFHETS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc61484g00007 506 Pfam Dof domain, zinc finger 141 198 IPR003851 GO:0003677|GO:0006355
Stsc61484g00007 506 MobiDBLite consensus disorder prediction 92 115 - -
Stsc61484g00007 506 MobiDBLite consensus disorder prediction 62 89 - -
Stsc61484g00007 506 MobiDBLite consensus disorder prediction 382 400 - -
Stsc61484g00007 506 MobiDBLite consensus disorder prediction 284 322 - -
Stsc61484g00007 506 PANTHER CYCLIC DOF FACTOR 2 1 506 IPR045174 GO:0003700|GO:0006355
Stsc61484g00007 506 ProSitePatterns Zinc finger Dof-type signature. 146 182 IPR003851 GO:0003677|GO:0006355
Stsc61484g00007 506 MobiDBLite consensus disorder prediction 116 142 - -
Stsc61484g00007 506 ProSiteProfiles Zinc finger Dof-type profile. 144 198 IPR003851 GO:0003677|GO:0006355
Stsc61484g00007 506 MobiDBLite consensus disorder prediction 1 144 - -
Stsc61484g00007 506 MobiDBLite consensus disorder prediction 279 322 - -
Stsc61484g00007 506 MobiDBLite consensus disorder prediction 43 61 - -
Stsc61484g00007 506 MobiDBLite consensus disorder prediction 380 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc61484g00007 Stsc-Chr61484 16309 19380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc61484g00007 8 506 C2C2-Dof Transcription Factor Family AT5G39660 44.190 4.26e-115 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc61484g00007 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc61484g00007 - - gmx:100788247 695.656