Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60834g00007 ATGGCGGAAGTGCAAGAAAATCATCAAGGGATCAAACTCTTCGGAGCAACGATCACATTGGACGGTGGAGATTCAAAGGAGGGAAGTAAGAAAGAAGAAGATCAAACGGTGGAAAAGAAGCCAGATAAGATCATAGCATGCCCAAGGTGCAAGAGCATGGAAACCAAGTTCTGTTACTTCAACAACTACAACGTTAACCAACCAAGGCACTTCTGCAAGGGATGCCAGAGGTACTGGACTGCCGGCGGGGCCCTCCGAAACGTCCCCGTTGGCGCTGGCCGCCGTAAGGCCAACAAGCTGCCGTGCCACGGTGCCGTTTCCGATGGTACTTGCCTATATGATGAAACTTCCGATGATGTCCACAAGTTTGGGTTGGAGGAAGGGTTGGTTTTGGATGAGTGGCATGATGCCGCCGTGCCTCACCGTGATTTCCAGCAGCTTTTTCGGGCAAAGCGCCGGAGGTCCGCTTCAGGTGCTTAA 480 0.5229 MAEVQENHQGIKLFGATITLDGGDSKEGSKKEEDQTVEKKPDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKANKLPCHGAVSDGTCLYDETSDDVHKFGLEEGLVLDEWHDAAVPHRDFQQLFRAKRRRSASGA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60834g00007 159 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677|GO:0006355
Stsc60834g00007 159 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677|GO:0006355
Stsc60834g00007 159 PANTHER CYCLIC DOF FACTOR 2 29 107 IPR045174 GO:0003700|GO:0006355
Stsc60834g00007 159 Pfam Dof domain, zinc finger 43 99 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60834g00007 Stsc-Chr60834 32173 33566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60834g00007 6 157 C2C2-Dof Transcription Factor Family AT2G34140 53.216 2.88e-51 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc60834g00007 zf-Dof 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60834g00007 - - vra:106779806 202.986