Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60755g00006 ATGGGCAAATCGGCTCTTTGGCTCACCACATTTACCCTCATCTTGACGGGCTTCCTGGCGGCCCGGGCCCAACCAGAAGCAAACTTCAAGTGCAGCAGCACAAACGCCACGTGTCCAGGCCTAATCGACTACTTTAGTCAGAATGCGACAACCCTCAAAGACATCCAGAAGCTCTTCAACGTGAAGCACCTCCCGGACCTGTTGGGCGCAAACGCCAACACCATCCCGGAAAACGCGTCAGGTAGTTACAGCGTGGGCCCCAACAAGGTAGTCAGGATTCCGTTTCCGTGCAAGTGCAGTAACGGAACGGGGCTGTCCAACCACGTGCCGTTATACAAGATCAAGCCCGGTGATGGCTTGGACTACATAGCCAGGACGGTTTTCGCGGGCGTGGTGACGTATCAGCAGATCCAGAAGGCTAATAAAATTGCTGATCCCAATAAGATCGTCGCCGGAGATTCCATTTGGATACCGTTGCCTTGTAGCTGTGATGCTGTGGGAGGGAGCAGTGTGGTGCACTATGGTTATATAGTCCCCACTGGAAGCACCGTGGAGGGGATTGCACAGGAGTTTGGTACCACGCAAGAAACCATTCTTAGTCTCAACGGTCTCGATGACCCTAAGAAGCTTCAGGCTCAGCAGGTTATCGATGTCCCTCTCAAAGCTTGTTCGACAAGTGTTAGAAACAATTCAATGGACTACCCTCTGCTGGTTTCAAATGGCACTTACGTCTACACTGCCAACGAATGCGTGAAATGCAAATGCGACTCCAGCAACAACTATGTATTGCAATGCCAGCCATCGCTTCTTAAACCAACAGGTGGAAAATGGTCTGTATGCCCCTCCATGAAATGCCAAGGGAATCTCACCATTGGCAACTTGACATCTGCTTCAGATGATCCCTGCAACCGCACCTTCTGTGCCTATGCCGGTTATAGCTCCAAAACAATCTCTGCCATTCTTGCTAATGAGTCCACCTGTCCTGCACCGGCACCTGCACCCAGTGGCGGTTCAGGAGGACCAGGTGGTTCAGGAGGATCAGGAGCATCAAGGACTACCTTCAGTCTTATCATTGTCCTCCACTTTATCTTCCTTGCTCTTTATATTTTGTAG 1113 0.5112 MGKSALWLTTFTLILTGFLAARAQPEANFKCSSTNATCPGLIDYFSQNATTLKDIQKLFNVKHLPDLLGANANTIPENASGSYSVGPNKVVRIPFPCKCSNGTGLSNHVPLYKIKPGDGLDYIARTVFAGVVTYQQIQKANKIADPNKIVAGDSIWIPLPCSCDAVGGSSVVHYGYIVPTGSTVEGIAQEFGTTQETILSLNGLDDPKKLQAQQVIDVPLKACSTSVRNNSMDYPLLVSNGTYVYTANECVKCKCDSSNNYVLQCQPSLLKPTGGKWSVCPSMKCQGNLTIGNLTSASDDPCNRTFCAYAGYSSKTISAILANESTCPAPAPAPSGGSGGPGGSGGSGASRTTFSLIIVLHFIFLALYIL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60755g00006 370 SUPERFAMILY LysM domain 175 219 IPR036779 -
Stsc60755g00006 370 CDD LysM 176 218 IPR018392 -
Stsc60755g00006 370 ProSiteProfiles LysM domain profile. 174 218 IPR018392 -
Stsc60755g00006 370 CDD LysM 112 157 IPR018392 -
Stsc60755g00006 370 ProSiteProfiles LysM domain profile. 110 157 IPR018392 -
Stsc60755g00006 370 Gene3D LysM domain 174 231 IPR036779 -
Stsc60755g00006 370 Gene3D LysM domain 111 165 IPR036779 -
Stsc60755g00006 370 SUPERFAMILY LysM domain 111 159 IPR036779 -
Stsc60755g00006 370 Pfam LysM domain 176 219 IPR018392 -
Stsc60755g00006 370 Pfam LysM domain 112 158 IPR018392 -
Stsc60755g00006 370 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 6 330 - -
Stsc60755g00006 370 SMART LysM_2 111 158 IPR018392 -
Stsc60755g00006 370 SMART LysM_2 175 219 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60755g00006 Stsc-Chr60755 15034 17370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60755g00006 1 360 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 44.751 4.31e-96 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60755g00006 - - gmx:100804190 412.535