Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60461g00003 ATGATCTCATTGTGCTCCCTAATTATTATAGTAGGTGTAGTAGAAACAAAATCAACAATAGAACCATGCAACTCCACAAAACCATGCCCTTCACTTCTCTCATACCTCTTGCCATGGGACTCAATGCTATCCGAAATAGCAACCCGCTTCAACGTCAACGTCTCTGATATCATGGCCGCAAACTCTGCCTTCCCGATAACACCATCATGCGACAGCGAGATCGTGAGAGCAGGATCAACGGTCAAGATACCAGCCACGTGTGAGTGCATGGACGGAATCAGAAGGTCGGTGTCAGCAGTGTACAGAGTGGAGGCATCAGACACACTGGAATCCATATCAGAGGCTTTTGGAGGGCTTGTTAGTGCAGATCAAATTCGGAGTGTCAACAATGGCGTGCCTTTGCTTGATGGAGATGTGGTAGTCATACCCTTGCCCTGCAGCTGCATGAAGAACAAGAACAATGGCAGAAGGGTGGTTTATATGTCGTATGTGGTTCAGAAAGGGGAGACATTGGAAAGTGTGGCCACATTTTTTGGTACAACTCTTTCTGATTTGGAATCTGTTAATGGCCTTGGACAAACTACCCTTCTACCTGGTGATATTTTATACATACCTATTCCAGCATGTTCATCAGCTACTCTGAATTGGTACAATGAGAAGTTGATGGTCCCAAATGGCTCTTATGCTTTAACTGCCACCAACTGTATTAAATGCACTTGTTCTCCGCACGATCTCAAGATGCAGTGTTTTCCTTCTGGAATGCATGTACCTTGCTATAATTTACGTTGCAAGGGGTCCAATCTTGCTATTGGGGATCAACATCTGGAATATTCCAATGCTGGATGCAATGTCACCCAATGTGTGTACCGTGGCCATAAGGGTGGAAAAATTCTGAGTAGTCTGATCAACTCTTCTTACCTGCAATGCCCGGATAATTCTAGTGGAGCAAAATGTTGGCCAACCTCAGCACCATATTTTGCAGGCCCATTTGTTTTATCTCCAAGCCCAAGCCCAACCTTATTCCCCTTGCCTGTTTCTGAGGCTGCTTTGATGACTCGTGCCTATGACTATGAGAGAAGGCTGCTGCTCTTGTTCTTCCCAATGATTCTCCTTTGTTTATTAATGTGA 1128 0.4495 MISLCSLIIIVGVVETKSTIEPCNSTKPCPSLLSYLLPWDSMLSEIATRFNVNVSDIMAANSAFPITPSCDSEIVRAGSTVKIPATCECMDGIRRSVSAVYRVEASDTLESISEAFGGLVSADQIRSVNNGVPLLDGDVVVIPLPCSCMKNKNNGRRVVYMSYVVQKGETLESVATFFGTTLSDLESVNGLGQTTLLPGDILYIPIPACSSATLNWYNEKLMVPNGSYALTATNCIKCTCSPHDLKMQCFPSGMHVPCYNLRCKGSNLAIGDQHLEYSNAGCNVTQCVYRGHKGGKILSSLINSSYLQCPDNSSGAKCWPTSAPYFAGPFVLSPSPSPTLFPLPVSEAALMTRAYDYERRLLLLFFPMILLCLLM 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60461g00003 375 CDD LysM 100 132 IPR018392 -
Stsc60461g00003 375 CDD LysM 162 204 IPR018392 -
Stsc60461g00003 375 SUPERFAMILY LysM domain 161 206 IPR036779 -
Stsc60461g00003 375 Pfam LysM domain 43 84 IPR018392 -
Stsc60461g00003 375 Pfam LysM domain 163 205 IPR018392 -
Stsc60461g00003 375 Pfam LysM domain 101 131 IPR018392 -
Stsc60461g00003 375 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 5 312 - -
Stsc60461g00003 375 SMART LysM_2 43 84 IPR018392 -
Stsc60461g00003 375 SMART LysM_2 162 205 IPR018392 -
Stsc60461g00003 375 SMART LysM_2 100 143 IPR018392 -
Stsc60461g00003 375 CDD LysM 38 83 IPR018392 -
Stsc60461g00003 375 ProSiteProfiles LysM domain profile. 161 204 IPR018392 -
Stsc60461g00003 375 Gene3D LysM domain 146 215 IPR036779 -
Stsc60461g00003 375 Gene3D LysM domain 39 90 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60461g00003 Stsc-Chr60461 45429 47336 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60461g00003 17 342 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 39.535 4.36e-74 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60461g00003 - - gmx:100819382 468.003