Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00027 ATGGAACAAGAAGGAGGAGGCTCAGACATGATGAACAAGAACCAGCTGAAGCATCAGAAGCAGCAGAAACAAGAAGTAGCAGTGCAAGTGAAGTGTCCAAGGTGTGATTCAATGAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCGCAGCCTCGTTACTTCTGCAGGGCTTGCAGAAGGTACTGGACACATGGCGGAGCCTTGAGGAACGTTCCCGTTGGTGGCCGTTCGCGCAAGCCCAAGCGTCCAAAGTTTACTAATGATAATAATAATCATTCCTCTGATGAGAACAACTGCTCTCATAGCAGCCTCACGGAAGCTATGGTGGTTGGGGTTCCATCTTCATTTTTGCAGGGTGGTGTTGGAGGGATTGGGATTCATCATTTTGGTGGTTCTAATAATAATAATTTGGGTGTTGTTTCTGGTTTTAATAATGTGGTGGGTTCTCATTCTCATCATCAATTCTATCATCAAATGATGATGGGTAACGCAAATCAACAACAAGGGTTGATGATGATGAATCATAATAATAATAGGGCTACTACCCTTAACCCTGAAGCTGATGGATCTCTGTGGAGTAATACTGCCATGGTCACCACCACCACCACTCACAGGAACAATAACGATTCTATTGCTGCTTCTTCTTCTGCTGCTGCTGCTTTCATGGCGAATCAGTGGCCTAATACTGTCACAGGGTTTGGCCCTCCACCATCATCTTTTTGA 729 0.4458 MEQEGGGSDMMNKNQLKHQKQQKQEVAVQVKCPRCDSMNTKFCYYNNYSLSQPRYFCRACRRYWTHGGALRNVPVGGRSRKPKRPKFTNDNNNHSSDENNCSHSSLTEAMVVGVPSSFLQGGVGGIGIHHFGGSNNNNLGVVSGFNNVVGSHSHHQFYHQMMMGNANQQQGLMMMNHNNNRATTLNPEADGSLWSNTAMVTTTTTHRNNNDSIAASSSAAAAFMANQWPNTVTGFGPPPSSF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00027 242 Pfam Dof domain, zinc finger 29 84 IPR003851 GO:0003677|GO:0006355
Stsc60420g00027 242 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 204 IPR045174 GO:0003700|GO:0006355
Stsc60420g00027 242 MobiDBLite consensus disorder prediction 73 102 - -
Stsc60420g00027 242 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Stsc60420g00027 242 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
Stsc60420g00027 242 MobiDBLite consensus disorder prediction 1 23 - -
Stsc60420g00027 242 MobiDBLite consensus disorder prediction 8 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00027 Stsc-Chr60420 114651 115379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00027 32 86 C2C2-Dof Transcription Factor Family AT4G21050 83.636 1.38e-30 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc60420g00027 zf-Dof 3.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00027 - - aip:107621958 202.986