Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60420g00026 ATGTTGGGTATGCCACTCACCCAATGCCCACAACAACAGGTTGGTTCATCATCAACAATGGAGAAAGCAGAGCAAGGAACAGCACTGAAGTGCCCTCGATGTGAGTCATCAAACACCAAGTTCTGTTACTACAACAATTACAGCTTGTCTCAGCCAAGGCACTTCTGCAAAGCCTGCAAGAGATACTGGACAAGGGGTGGAACCCTCAGGAACGTTCCTGTTGGTGGCGGTTGCAGAAAGAACAAGCGTCTCAAGAGATCCTCTTCTTCTCCTTCTTCCACTACTACTACTTCTTCAAATCAGATCAATAACAACAACAGTTTGTTTTCATCAACATCATGTTCTGATGTGAATCTGCCGTTATTCCACAACAGCAGCTTCATCACTTCTTCTTTTGCTGCTGCTGGTTCTTCTTCTCCAATAAGCTATGATTCTATCTTCGGTAGTAGTAATAACTTATTATTACCTGCTTCTTGCACAACTATGATGCCTTCTTCGTCGGTGTTGATGAGATCTACTATGGATCTGACGATCAATAATGGTGATGACAATGGGAACAACAACACTTTTGAGGGATTGTTAGGCCCAGTGGAGAATCATGATGATCATAGTAGTGGCGGTGCTGAGCATAATCAAGTGCCTACTAGTTTGTTTTCTGATCCCAATTCTCTTTATTATTGGAATAATGGCTTCAGTTCTTGGAACAACAACAACGATAATCATCTTGCTCCATCATCGCTTACTTCTCTCATCTAG 756 0.4246 MLGMPLTQCPQQQVGSSSTMEKAEQGTALKCPRCESSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRLKRSSSSPSSTTTTSSNQINNNNSLFSSTSCSDVNLPLFHNSSFITSSFAAAGSSSPISYDSIFGSSNNLLLPASCTTMMPSSSVLMRSTMDLTINNGDDNGNNNTFEGLLGPVENHDDHSSGGAEHNQVPTSLFSDPNSLYYWNNGFSSWNNNNDNHLAPSSLTSLI 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60420g00026 251 MobiDBLite consensus disorder prediction 1 21 - -
Stsc60420g00026 251 MobiDBLite consensus disorder prediction 87 102 - -
Stsc60420g00026 251 Pfam Dof domain, zinc finger 28 83 IPR003851 GO:0003677|GO:0006355
Stsc60420g00026 251 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Stsc60420g00026 251 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 181 IPR045174 GO:0003700|GO:0006355
Stsc60420g00026 251 MobiDBLite consensus disorder prediction 74 102 - -
Stsc60420g00026 251 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60420g00026 Stsc-Chr60420 109283 110957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60420g00026 28 151 C2C2-Dof Transcription Factor Family AT5G60200 50.382 2.11e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc60420g00026 zf-Dof 1.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60420g00026 - - adu:107468324 164.466