Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc477g00005 ATGGCGGAAGTGCAAGAAAATCATCAAGGGATCAAACTCTTCGGAGCAACGATCACATTGGACGGTGGAGATTCAAAGGAGGGAAATAAGAAAGAAGAAGATCGAACGGTGGAGAAGAAGCCAGATAAGATCATAGCGTGCCCAAGATGCAAGAGCATGGAAACCAAATTCTGTTACTTCAACAACTACAACGTTAACCAACCAAGACACTTCTGCAAGGGATGCCAAAGGTACTGGACCGCCGGTGGAGCCCTCCGAGACGTCCCTGTTGGCGCCGGCCGCCGTAAGGCCAACAAGCTGCCGTGTCGCGGCGCCGTTTCCGATGATACTTGCCTATATGATGAAATTTCCGATGATGTCCACAAGTTTGGGTTGGAGGAAGGGTTGGTTTTGGATGAGTGGCATGATGCCACCGTGCCTCACGGTGATTTCCGGCAGCTTTTTCCGGCCAAGCGCCGGAGGTCCGCTTCAGGTGCTTAA 480 0.5188 MAEVQENHQGIKLFGATITLDGGDSKEGNKKEEDRTVEKKPDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRDVPVGAGRRKANKLPCRGAVSDDTCLYDEISDDVHKFGLEEGLVLDEWHDATVPHGDFRQLFPAKRRRSASGA 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc477g00005 159 PANTHER CYCLIC DOF FACTOR 2 27 102 IPR045174 GO:0003700|GO:0006355
Stsc477g00005 159 Pfam Dof domain, zinc finger 43 99 IPR003851 GO:0003677|GO:0006355
Stsc477g00005 159 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677|GO:0006355
Stsc477g00005 159 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc477g00005 Stsc-Chr477 24514 25275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc477g00005 6 154 C2C2-Dof Transcription Factor Family AT1G29160 53.571 2.53e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc477g00005 zf-Dof 3.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc477g00005 - - vra:106779806 205.682