Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30931g00001 ATGGATTCATCATCTTCCGATAATAATTGGCTTCAGGGCACAATTAACGAGGAGGTTAGTAGAGGGACGATGATGGATGATTCTTCTTGTCCATCCCCAACAGGAGGGGAGATGATGATGATTGCATGCTCAAACAAGTTGCCAACAATGATCATAGAAGGAAGTAGCAGTAATGGTAGGAGGCTAATGACAAGACCCCCACAAGATCAACTAGCTCTGAAGTGTCCAAGATGTGAATCAACACACACAAAGTTCTGTTACTACAACAACTACAGCCTCTCACAGCCAAGGTACTTCTGCAAATCTTGTAGAAGGTATTGGACCAAAGGTGGAACTCTTAGGAACATCCCTGTTGGTGGTGGTTGTAGAAAGAACAACAACAAGAAACCCTCTTCTTCTAATTCCTCAAAGAAATCATCTTCATCATCCATTAATAACAACAACAATGACCAACAATCACCACTTCCTATTAGTATTAATGTTAATAATCATCAAAACCAACTACATTATCCTTCTAATAATAGTTTCCCAGATCTGCATCAATTCTCATCTAACACGAACAATTTGTTTGGGATGACTAGTATTGGAGGGGGGTTAATGGGAAACCCTAATTTCATGTTTGAGAATAATAATAATAACCCTAGGCCATTGGACTTCATGATGGAGAGTGGTATCATTAAGAGTAGTGGTTCTAGAAGCTTTGGTTTTCTTGGAAATAGTGATCATCATCATATGATGATGAATGGTGGTAATTACAATGTGATGATGTCATCATCACCAAATTTTCAAGGACTTTGCTCTTCAGCATTTGGGGGAAATAATAACAATAATGTGTCACTTGATGGAGGGAACAATCACAACAACAACAACAATGCTGGGAGTTACAACATTATGGGATCTTGTCAGAGATTGATGCTACCATATGATGATTCAGGTGATGACAATGGCAATCAAAATAATTTCATTGATGTGAAGCCAAACCCTAGGCAGTTGTTGTCCCTTGATGGAAAAGAGACATTTGGGTCATGGACTACTGGGATGATGAATAGCTATGGATCTTCCACAACAAACCCTTTGGTCTAG 1083 0.3906 MDSSSSDNNWLQGTINEEVSRGTMMDDSSCPSPTGGEMMMIACSNKLPTMIIEGSSSNGRRLMTRPPQDQLALKCPRCESTHTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNNNKKPSSSNSSKKSSSSSINNNNNDQQSPLPISINVNNHQNQLHYPSNNSFPDLHQFSSNTNNLFGMTSIGGGLMGNPNFMFENNNNNPRPLDFMMESGIIKSSGSRSFGFLGNSDHHHMMMNGGNYNVMMSSSPNFQGLCSSAFGGNNNNNVSLDGGNNHNNNNNAGSYNIMGSCQRLMLPYDDSGDDNGNQNNFIDVKPNPRQLLSLDGKETFGSWTTGMMNSYGSSTTNPLV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30931g00001 360 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 63 255 IPR045174 GO:0003700|GO:0006355
Stsc30931g00001 360 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Stsc30931g00001 360 Pfam Dof domain, zinc finger 72 127 IPR003851 GO:0003677|GO:0006355
Stsc30931g00001 360 MobiDBLite consensus disorder prediction 125 158 - -
Stsc30931g00001 360 MobiDBLite consensus disorder prediction 117 158 - -
Stsc30931g00001 360 ProSitePatterns Zinc finger Dof-type signature. 75 111 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30931g00001 Stsc-Chr30931 2805 4229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30931g00001 7 360 C2C2-Dof Transcription Factor Family AT5G62940 37.594 9.05e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc30931g00001 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30931g00001 - - aip:107631971 496.123