Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30741g00005 ATGTGTTTGATGAATTTATTGCAGGAAATGTCATCAAACCAGACACTGGAGAACATGATAGGATGTTCATCAACAAAGAGTCAGCAGCAGCAGCAACAACTAGTAGAGAGGAAGCCAAGGCCACAGCCAGAACAAGCACTGAAATGTCCAAGATGTGACTCTACCAACACCAAATTCTGCTACTACAACAACTACAGCCTCTCTCAGCCAAGGTACTTCTGCAAATCTTGCAGAAGATACTGGACCAAAGGAGGAACACTCAGGAATGTTCCTGTTGGTGGTGGCTGCAGGAAGAACAAGAGATCTTCTAATTCTTCATCTTCATCAGCAACTTCATCTTCATCTAATTCACCTGCACATGTATCCTCTTCAAGGAGGCCTCATCAAGATCATCCTTTCATCACATCACCTAATAATCCACTCATCTCTGCTTTCCCTCATTTGGCTTATGATCATCACCCTTCTTCTTCTTCTTCTTCACCCAGTGACCTCACCTTAGCACTTGCAAGGCTCCACAAGCAAACAATGCCTTTTGATGATCATGATCTCTCAATCTTGGGCAACCCTACAAGCTCCCTTTCTGATATTCTTGGAAATCAAGGCCTTAACACTCACCACACCAACAATGGTTTCTTGGAAGCACTTAGAACCGGATTCCAAGCAAACATTAACAACAACAATAGCACTCTTCATCATCAGAATAATCTCTACTATTCATATGGGAACGGGGACATGGGTGAGGTTGTGGACAATGGTGCTGTTCATGGTGGAGACATGTTGAACAACTATGATTCAGAGATGAGCAATTGCAATGCAGCAGCAAGTCAAGCAATGAGTACTGTCAGCACCATGAAGCAAGAGCTATGCAGTGAAGCTACAAATAAGGTTCTTGGTGGTGGTGGCGGCTTTCCATGGCATCATAACCTCAACAACAATGGGGACACAAACATGATGGGTGAACTTGATTCAGGTAGAACAAGTTGGAATGGTTTCACATCTTCAAATTGGCATGGTGGCCTTCTCCATAGTCCTCTAATGTAA 1041 0.4352 MCLMNLLQEMSSNQTLENMIGCSSTKSQQQQQQLVERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSNSSSSSATSSSSNSPAHVSSSRRPHQDHPFITSPNNPLISAFPHLAYDHHPSSSSSSPSDLTLALARLHKQTMPFDDHDLSILGNPTSSLSDILGNQGLNTHHTNNGFLEALRTGFQANINNNNSTLHHQNNLYYSYGNGDMGEVVDNGAVHGGDMLNNYDSEMSNCNAAASQAMSTVSTMKQELCSEATNKVLGGGGGFPWHHNLNNNGDTNMMGELDSGRTSWNGFTSSNWHGGLLHSPLM 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30741g00005 346 MobiDBLite consensus disorder prediction 27 48 - -
Stsc30741g00005 346 MobiDBLite consensus disorder prediction 98 137 - -
Stsc30741g00005 346 MobiDBLite consensus disorder prediction 91 137 - -
Stsc30741g00005 346 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Stsc30741g00005 346 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 27 237 IPR045174 GO:0003700|GO:0006355
Stsc30741g00005 346 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Stsc30741g00005 346 Pfam Dof domain, zinc finger 45 101 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30741g00005 Stsc-Chr30741 21864 23272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30741g00005 4 346 C2C2-Dof Transcription Factor Family AT2G28510 36.111 1.92e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc30741g00005 zf-Dof 7.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30741g00005 - - aip:107612899 481.485