Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30349g00018 ATGTCGGAAGTTAAGGACCCGGCGATAAAGCTTTTTGGGAGGACGATTCAGCTGCCACTGATCCCCAATGACCCTTCTCCACCACCACCTCCCCCTCTTCCATCTTCTTCTTCTCCACCAACTGAAGTTGAAGTGAGTTCTTCATCACAACCAGAAACAGAGGAACCATCAAAGAGAGAACTAACCTCAACACAAGATAAAGAAAGCACAGAGGATTTGAAATCTCCCACAACAACATCTTCAGGCATATTTGAGAACCCAAAGACTCCCTCAGCTGAAAGAGAGAGTTCACTACTCAAGTCATCCACAAATGGCGGAGAACAGAGTGAGACCAGTGTTTCTCAAGAAAAAACTCCCAAGAAACCAGACAAGATACTTCCCTGCCCGCGATGCAACAGCATGGACACCAAATTCTGCTATTACAACAATTACAACGTCAATCAGCCTCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCCGGAGGAACAATGAGGAACGTGCCAGTAGGCGCCGGCCGCCGCAAGAACAAAAACTCTGCCGCCTCGCATTATCGCCAGATAATGGTCCCGGAGGCCCTTCAAGCAGCACACCTGAATGCCTCCAATGGACTACACAATGTTGTCTTGACCTTTGGCCCAGATTCTCCCCTTTGTGATTCCATGTCCTCTGTCTTGAACATTGCAGACAAAGCCACAAATGGTGTTGTAAACGGTTTTCATCCACCGGAGGCAGCGAGTACTTTTGTTTCCTATGGCAGGGAGGATGATGGGAATGATCACTCAGTTGGAGTTTCTGGTACAACTTCAACTTCATCAGAGAGGAGAAGCCATGCCAGCTCCCATGATTCAGCTGATAAAAGAGTGGAAAGTTTCCCTCCTCAACTAACTTACTTCCCAAGTAATTCTCCATGGCCGTATCCGTGGAATTCGCCAATGCCTCCTCCTCCTCCTCCCACATTTTGCCCTCCAGGCTATCCTATGTCAATATATGCCGCCCCTTCATACTGGGCATGGAATGTGCCATGCATCTCACCCCAATCTCCGGCTGCTGGTTCCGGCCCGAATTCACCATTGGGGAAACACTCAAGGGATGGTAACATCATAACCCCGGCGAATTCACGTAAGGAAAAGCCTGATAGAGAGCAGAGCAACAATTCAGAAAGCAATAATGTGTTGATCCCCAAAACACTTAGAATTGATGATCCTAGTGAAGCTGCAAAGAGTTCAATATGGTCAACACTAGGAATCAAGAATGAGAAGGTCAACTCTCTCAATGGAGGAGGCCTCTTCANNNNNNNNNNGTTCCCTTCCAAGGGTAACGACAAGAGTCGTGTGGTCGAGGCTTCGCCGATGCTGCACGCCAACCCTGCAGCCCTAACACGGTCTCTCACCTTCCACGAGCGAACCTAG 1416 0.4831 MSEVKDPAIKLFGRTIQLPLIPNDPSPPPPPPLPSSSSPPTEVEVSSSSQPETEEPSKRELTSTQDKESTEDLKSPTTTSSGIFENPKTPSAERESSLLKSSTNGGEQSETSVSQEKTPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSAASHYRQIMVPEALQAAHLNASNGLHNVVLTFGPDSPLCDSMSSVLNIADKATNGVVNGFHPPEAASTFVSYGREDDGNDHSVGVSGTTSTSSERRSHASSHDSADKRVESFPPQLTYFPSNSPWPYPWNSPMPPPPPPTFCPPGYPMSIYAAPSYWAWNVPCISPQSPAAGSGPNSPLGKHSRDGNIITPANSRKEKPDREQSNNSESNNVLIPKTLRIDDPSEAAKSSIWSTLGIKNEKVNSLNGGGLFXXXXFPSKGNDKSRVVEASPMLHANPAALTRSLTFHERT 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30349g00018 471 MobiDBLite consensus disorder prediction 1 127 - -
Stsc30349g00018 471 MobiDBLite consensus disorder prediction 74 113 - -
Stsc30349g00018 471 ProSiteProfiles Zinc finger Dof-type profile. 126 180 IPR003851 GO:0003677|GO:0006355
Stsc30349g00018 471 MobiDBLite consensus disorder prediction 53 73 - -
Stsc30349g00018 471 ProSitePatterns Zinc finger Dof-type signature. 128 164 IPR003851 GO:0003677|GO:0006355
Stsc30349g00018 471 MobiDBLite consensus disorder prediction 348 398 - -
Stsc30349g00018 471 MobiDBLite consensus disorder prediction 304 323 - -
Stsc30349g00018 471 MobiDBLite consensus disorder prediction 249 296 - -
Stsc30349g00018 471 Pfam Dof domain, zinc finger 123 180 IPR003851 GO:0003677|GO:0006355
Stsc30349g00018 471 PANTHER CYCLIC DOF FACTOR 2 1 471 IPR045174 GO:0003700|GO:0006355
Stsc30349g00018 471 MobiDBLite consensus disorder prediction 21 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30349g00018 Stsc-Chr30349 79071 82313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30349g00018 1 470 C2C2-Dof Transcription Factor Family AT3G47500 40.514 6.37e-88 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc30349g00018 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30349g00018 - - gmx:100813315 515.383