Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc271919g00006 ATGGGCAAATCGGCTCTTTGGCTCACCACATTTACCCTCCTCTTCACGGGCTTCCTTTTGGCCCGGGCTCAACCAGAGGCAAACTTCAAGTGCAGCAGCAGCACAAACGCCACGTGTCCAGGCCTAATCGACTACTTCAGTCAGAATGCAACAACCCTCCGTAACATCCAGCAGCTCTTCAACGTGAAGCACCTCCCGGACCTATTGGGCGCAAACGCCAACACCATACCTGAAAACGCGTCCGCCACTTACACCGTGGGCCCCAACAAGGTAGTCAGGATTCCGTTTCCGTGCAAGTGCAGTAACGGAACGGGGCTGTCCAACCACGTGCCGTTATACAAGATCAAGCCCGGTGACGGCTTGGACTACATAGCGAGGACGGTTTTCGCGGGCGTGGTGACGTATCAGCAGATCCAGAAGGCTAATAAGATTGCTGATCCCAATAAGATCGTGGCCGGAGATTCCATTTGGATACCGTTGCCTTGTAGCTGTGATGCTGTGGGAGGGAGCAGTGTGGTGCACTATGCTTATATAGTCCCCACCGGAAGCACCGTGGAGGGGATTGCAGAGGAGTTTGGTACCACGCAAGAAACCATTCTTAGTCTCAACGGTCTCGATGACCCTAAGAAACTTCAGGCTCAGCAGGTTATCGATGTCCCTCTCAAAGCTTGTTCGACGAGTGTTAGAAACAATTCAATGGACTACCCTCTGCTGGTTTCAAATGGCACTTACGTCTACACTGCCAACGAGTGCGTGAAATGCAAATGCGACTCCAGCAACAACTATGTATTGCAATGCCAGCCATCGCTTCTTAAACCAACAGGGGGAAAGTGGTCTGTATGCCCCTCCATGAAATGCCAAGGGAATCTCACCATTGGCAACTTGACATCTGCTTCAGATGATCCCTGCAACCGCACCTTCTGTGCCTATGCTGGTTATAGCTCCAGAACAATCTCTGCCATTCTTGCTAATGAGTCCACCTGTCCTGCACCGGCACCTGCACCCAGTGGCGGTTCAGGAGGGTCAGGAGCATCAAGGACTACCTTCAGTCATATCATCTTTCTCCACTTTATCTTCCTTGCTCTCTATATTTTGTAG 1098 0.5155 MGKSALWLTTFTLLFTGFLLARAQPEANFKCSSSTNATCPGLIDYFSQNATTLRNIQQLFNVKHLPDLLGANANTIPENASATYTVGPNKVVRIPFPCKCSNGTGLSNHVPLYKIKPGDGLDYIARTVFAGVVTYQQIQKANKIADPNKIVAGDSIWIPLPCSCDAVGGSSVVHYAYIVPTGSTVEGIAEEFGTTQETILSLNGLDDPKKLQAQQVIDVPLKACSTSVRNNSMDYPLLVSNGTYVYTANECVKCKCDSSNNYVLQCQPSLLKPTGGKWSVCPSMKCQGNLTIGNLTSASDDPCNRTFCAYAGYSSRTISAILANESTCPAPAPAPSGGSGGSGASRTTFSHIIFLHFIFLALYIL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc271919g00006 365 CDD LysM 113 158 IPR018392 -
Stsc271919g00006 365 SUPERFAMILY LysM domain 112 160 IPR036779 -
Stsc271919g00006 365 Gene3D LysM domain 174 232 IPR036779 -
Stsc271919g00006 365 Gene3D LysM domain 112 166 IPR036779 -
Stsc271919g00006 365 SMART LysM_2 112 159 IPR018392 -
Stsc271919g00006 365 SMART LysM_2 176 220 IPR018392 -
Stsc271919g00006 365 ProSiteProfiles LysM domain profile. 175 219 IPR018392 -
Stsc271919g00006 365 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Stsc271919g00006 365 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 10 331 - -
Stsc271919g00006 365 Pfam LysM domain 177 220 IPR018392 -
Stsc271919g00006 365 Pfam LysM domain 113 159 IPR018392 -
Stsc271919g00006 365 SUPERFAMILY LysM domain 175 220 IPR036779 -
Stsc271919g00006 365 CDD LysM 177 219 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc271919g00006 Stsc-Chr271919 33976 36022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc271919g00006 1 355 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 45.810 4.15e-96 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc271919g00006 - - gmx:100804190 409.838