Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241796g00009 ATGGAGAAGCAAGACACCATTCTTCACTGCACTGTGTTCTTGCTACTACTGTTTCAGATTCTTTCATCACCAAAACCAGCAGCATGCAAATCCACCATAGAACCCTGCACCAACAACGACTCATGCAACGCTCTCTTAGGCTACACACTCTACACCGACCTCAAAGTCTCCGAGGTAGCTTCACTCTTTCAAATCGACCCAATCTCTCTCCTCACCGCAAACGCCATCGACATCTCTTACCCTGACGTGGAACACCATATTCTCCCTTCCAAGCTCTTCATCAAGGTCCCCATTTCATGCTCCTGCGTCGATGGGATCCGCAAATCGGTTTCAACTCATTACAGGACTCGCCCTTCCGACACGCTTTCTTCCATTGCAGACTCTGTCTATGGAGGTTTGGTATCTGCGGACCAGCTTTCCGAAGCTAACTCCATAAGTGATCCTTCTGTTCTTGATGTGGGTCAGAGCCTTGTGGTGCCTCTTCCTTGCACTTGTTTTAATGGAACTGATAATTCACTCCCTGCGATTTACATGTCCTATGTGGTTCAGCCTGTTGATTCTTTGGCTGCTATTGCAGCCAGGTATTTCACTACTTTAACTGATTTGATGGATGTTAATGCCATGGGAAGTACTGCTATTACTGATGGTGATATTCTTGCCATTCCAATTCCGGCTTGTGCTTCAAATTTCCCAAAATCTTCTGCTGATTTTGGCTTGCTTGTCCCCAATGGAAGTTATGCCATTACAGCAGGGCATTGCGTGCAGTGTAGCTGTGGACCACGGGATCTTAATTTGTACTGTATGCCGGCTTCGCTGGCTGTTTCTTGCTCCAGCATGCAATGTAAAAACAGCAATCTCATGGTTGGGAATGTTACGGTCCAACAAGGTAGTGGCGGCTGCAATGTTACTTCTTGTAGCTACGATGGAATTGTTAATGGCACCATAATGACAACGTTGACACCATCCCTTCAACCTCGATGTCCAGGGCCTCAGCAATTCCCTCCTCTCGTCGCCCCACCTACATCGGTAAGGAGAGATTCAGAACTAGCACCAGCACCATCACCTCAATCAGATGGAATTGGTCTAGGAACACCCAAATCCTCGGTGGTTCCTTCAACAACAGGTCTCCCAGGATTCCCTCCGGCAAATGGTCCTATTAGTGCGCTTTCTTCTGGTGCTTCTGCCGCTTGCTCCTTGGTTATTCCATTACCCACCTTGACATCTTCCCTTGTGTTATTACTTGTCAAGTTGATGATACCTGCGTTGTTGTAA 1272 0.4733 MEKQDTILHCTVFLLLLFQILSSPKPAACKSTIEPCTNNDSCNALLGYTLYTDLKVSEVASLFQIDPISLLTANAIDISYPDVEHHILPSKLFIKVPISCSCVDGIRKSVSTHYRTRPSDTLSSIADSVYGGLVSADQLSEANSISDPSVLDVGQSLVVPLPCTCFNGTDNSLPAIYMSYVVQPVDSLAAIAARYFTTLTDLMDVNAMGSTAITDGDILAIPIPACASNFPKSSADFGLLVPNGSYAITAGHCVQCSCGPRDLNLYCMPASLAVSCSSMQCKNSNLMVGNVTVQQGSGGCNVTSCSYDGIVNGTIMTTLTPSLQPRCPGPQQFPPLVAPPTSVRRDSELAPAPSPQSDGIGLGTPKSSVVPSTTGLPGFPPANGPISALSSGASAACSLVIPLPTLTSSLVLLLVKLMIPALL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241796g00009 423 Gene3D LysM domain 108 168 IPR036779 -
Stsc241796g00009 423 MobiDBLite consensus disorder prediction 360 374 - -
Stsc241796g00009 423 SUPERFAMILY LysM domain 178 223 IPR036779 -
Stsc241796g00009 423 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 331 - -
Stsc241796g00009 423 SMART LysM_2 179 222 IPR018392 -
Stsc241796g00009 423 SMART LysM_2 113 160 IPR018392 -
Stsc241796g00009 423 CDD LysM 112 159 IPR018392 -
Stsc241796g00009 423 Pfam LysM domain 180 222 IPR018392 -
Stsc241796g00009 423 Pfam LysM domain 114 160 IPR018392 -
Stsc241796g00009 423 MobiDBLite consensus disorder prediction 330 376 - -
Stsc241796g00009 423 SUPERFAMILY LysM domain 112 161 IPR036779 -
Stsc241796g00009 423 ProSiteProfiles LysM domain profile. 112 159 IPR018392 -
Stsc241796g00009 423 CDD LysM 179 221 IPR018392 -
Stsc241796g00009 423 Gene3D LysM domain 169 234 IPR036779 -
Stsc241796g00009 423 ProSiteProfiles LysM domain profile. 178 221 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241796g00009 Stsc-Chr241796 61673 64941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241796g00009 12 398 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 69.565 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241796g00009 - - gmx:100777292 654.825