Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241771g00006 ATGCAAAAAGAAGGAGAAGGAGAAGCGAGTAAAGAGCAAGTTGGTCGGGGTCGAGGTCCAGGTCTGCCTCGTCCACGGGAGGAGCCGCCACAGCATAAATGCCCGCGGTGTGATTCAGAGAACACCAAGTTCTGCTATTACAACAACTACAGCCTGTCACAGCCAAGATACTTGTGCAAAGCATGTAAGAGGTACTGGACACAAGGTGGAACCCTCAGGAACATACCTCTTGGTTCTTCCAAGAACAAGAACAAGCACAACAAGCGTCCCTTCAACACTACGTCTTCCTCTTCTTCCTCCTCCAATAACAATCAAAAGCCTCCTCAACCCTATTGTCATCATGCTGCTGCTGCTGCTACTTCTGTTGGTGGTTCTACTACTACTATTACTTGTTCGTTTCTTGGGGAGGCATTACCATCATCAGCAGTAGTACAACAACATGGCTTCATGATTCCATTATCATCATCAGCAGCATCAGGGAGCAGCATGGGTGAGTTTACAACTGCTGCTGCTTCTCATCAACTTCAACATCAATGGACCTCTCATGCCAACTACTCTTTCTGGAGTACCACTGTCAGCACTACTTCTTCTTCTTCCATAGGCGCTAATAATATCATGCCAAGGGTTGATGATGCACCTTCATCACCTTCGTCTTCTTCTTTCATCACACCAAATCAGTGGTTACATCTCAAAGGGAACCACCCAATGCCTCCTCCATGA 720 0.4694 MQKEGEGEASKEQVGRGRGPGLPRPREEPPQHKCPRCDSENTKFCYYNNYSLSQPRYLCKACKRYWTQGGTLRNIPLGSSKNKNKHNKRPFNTTSSSSSSSNNNQKPPQPYCHHAAAAATSVGGSTTTITCSFLGEALPSSAVVQQHGFMIPLSSSAASGSSMGEFTTAAASHQLQHQWTSHANYSFWSTTVSTTSSSSIGANNIMPRVDDAPSSPSSSSFITPNQWLHLKGNHPMPPP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241771g00006 239 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
Stsc241771g00006 239 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 187 IPR045174 GO:0003700|GO:0006355
Stsc241771g00006 239 MobiDBLite consensus disorder prediction 89 109 - -
Stsc241771g00006 239 MobiDBLite consensus disorder prediction 21 35 - -
Stsc241771g00006 239 Pfam Dof domain, zinc finger 31 86 IPR003851 GO:0003677|GO:0006355
Stsc241771g00006 239 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Stsc241771g00006 239 MobiDBLite consensus disorder prediction 1 35 - -
Stsc241771g00006 239 MobiDBLite consensus disorder prediction 73 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241771g00006 Stsc-Chr241771 64291 65174 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241771g00006 33 90 C2C2-Dof Transcription Factor Family AT1G28310 81.034 2.74e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc241771g00006 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241771g00006 - - aip:107634681 230.335