Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241730g00002 ATGGTTTTCACTTCCATTCCAGCAGCTTATCTTGAAGCAGCAGCCAACTGGCAGCAGCATCATCATCAACAGCAACAACAAAATCATCAACCAAGTGGCAACACCGGTGGTTCGGCATCTCCTCAACTACTTCCACCGCCGCCTCCTCCACCACCACAGCCTCAACCTCATGGAGCCGGAGGAGGAGCTGGCTCCATCAGGCCAGGCTCGATGGCGGATAGGGCTAGGATGGCGAACATCCCCATGCCTGAGGCTGCACTAAGGTGTCCAAGATGCGAATCAACCAACACAAAGTTTTGCTACTTCAACAATTATAGCCTCTCTCAGCCCCGCCACTTTTGCAAGACCTGTAGAAGGTACTGGACAAGAGGCGGGGCTTTGAGGAACGTCCCCGTCGGCGGGGGATGTAGAAGAAACAAAAGAAGCAAAGGAGGCGGTGGGGGATCCTCCCGATCCCCGGCCGCAAGCTCCGACCGCCAGACAGGGAGTGCCAGCTCAACAAACTCAGTTTCCTCAAACTCAACCGGCGATATAATGGGCCTTGGCCCATCTATGCCACCATTAAGATTCATGGCTCCATTGCATCATCACCAACTCTCAGATTTTGCAACAGGTGGTGGGACTGAAATACCCCTGAACTATAACCTAATGAACTACACCTCATCAATTTCCGGGTCAATGGGAGGTGTAGGTTTAGGTGACTTGAGTTTCCAAATAGGAAATCCTCTGGGCAGCGGCGGCGGCGGTGGAGGAGGAAGTGGCGGTGGCGGCAGTGGTGGTGGTTCTTCTCTTTTATCTGGATTAGAACAATGGAGGATTCCACAACAGTTTCCCTTCATGGCTGGCTTGGAAGGTTCTTCACATGGTGGTGGATTATACCCTTTTGAAGGAGGTGCTGAGATAGGTGGTTATGTGAGGCCAAAGGTTTCAACTTCCATGGTGTTAACACAATTGGCTTCAGTGAAAATGGAAGATTCTAGAGAGCTTAATAATAACAATGTGTCTTCTGGACAGTTCTTGATGGGAAGCATTATCAACAACAACAACAACAATGTTCCAACAAGTGAACAATATTGGAACAATGGTGCTGCTGCTGGAACTTCTGCATCTGCTTCATGGACTGAACTTTCTGGTTTTAGTTCTTCTTCCACTACTAGCAATAACCAACTATAG 1173 0.4953 MVFTSIPAAYLEAAANWQQHHHQQQQQNHQPSGNTGGSASPQLLPPPPPPPPQPQPHGAGGGAGSIRPGSMADRARMANIPMPEAALRCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGGGGGSSRSPAASSDRQTGSASSTNSVSSNSTGDIMGLGPSMPPLRFMAPLHHHQLSDFATGGGTEIPLNYNLMNYTSSISGSMGGVGLGDLSFQIGNPLGSGGGGGGGSGGGGSGGGSSLLSGLEQWRIPQQFPFMAGLEGSSHGGGLYPFEGGAEIGGYVRPKVSTSMVLTQLASVKMEDSRELNNNNVSSGQFLMGSIINNNNNNVPTSEQYWNNGAAAGTSASASWTELSGFSSSSTTSNNQL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241730g00002 390 MobiDBLite consensus disorder prediction 16 70 - -
Stsc241730g00002 390 MobiDBLite consensus disorder prediction 41 57 - -
Stsc241730g00002 390 ProSitePatterns Zinc finger Dof-type signature. 89 125 IPR003851 GO:0003677|GO:0006355
Stsc241730g00002 390 MobiDBLite consensus disorder prediction 243 265 - -
Stsc241730g00002 390 MobiDBLite consensus disorder prediction 145 179 - -
Stsc241730g00002 390 Pfam Dof domain, zinc finger 86 141 IPR003851 GO:0003677|GO:0006355
Stsc241730g00002 390 ProSiteProfiles Zinc finger Dof-type profile. 87 141 IPR003851 GO:0003677|GO:0006355
Stsc241730g00002 390 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 300 IPR045174 GO:0003700|GO:0006355
Stsc241730g00002 390 MobiDBLite consensus disorder prediction 17 40 - -
Stsc241730g00002 390 MobiDBLite consensus disorder prediction 128 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241730g00002 Stsc-Chr241730 17396 19120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241730g00002 66 325 C2C2-Dof Transcription Factor Family AT2G37590 42.754 2.33e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc241730g00002 zf-Dof 4.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241730g00002 - - gmx:100796820 294.278