Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2208g00001 ATGCAGGAGATACATTCAATGGGAGGCACAAGGTTCTTCGGAGCTGCTGACAGGAGGCTCAGGCCACACCACCACCACAACGCCGCCGCCACCACCACCAACTGCCACCACCAGCACCAAGCACTTAAATGTCCCCGTTGTGACTCACTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCCCAGCCTCGCCACTTCTGTAAGAACTGCCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGCAACGTCCCTGTCGGCGGCGGTTGCCGCAAGTCCAAGCGTTCCTCCAACGACAACAGGACCTCTAAAACCACCAAAAGTAATAATAGCGCCACCGCCACTTCCTCCGCGGAAACACCGCCGCAAACGACGTCGTCTCAGCCTCCACCGCCGGACCAGAACGCAAATTCTCACTCCAGCAGCGAGAGCTCTAACCTCACCGCGGCGGCGACGGCGGCGGCCACCACCGCCACGACGGAGCTGAACTCTGATTCTTCCAAGTTGTTGATCCACGAGAATAACAACAACAACGCTTCATCGAACCCTAATTTGGAGAGTGGCGGTATCTTCTCTGAGATAGGGACGTTCACGAGCTTGATGGCTTCTTCTTCTTCGAACAACGATGCATTGGCGTTTGGATTTGGAGGTGGTGGTGGTATTGTTCCCGATACGACGTCGTTTCAGTGGCATCATCAACAGCAGAAGTTGGCGGAGAATCTGAACGACGGTGGTGGTGGTGGGAGTTTGCTGGATCATCATGGACAGGGTAGCACGGTAACCGTTGATTTGTCGGCACTTGAGAGCAAGGCGGGACACGGTGGATTTGGACCGTTGGATTGGCAAAGCGGTGTGGATCAAGGTTTGTTTGATCTCCCCAACACCGTTGATCATGCTTACTGGAGTCAAACTCAATGGTCTGATCACGACAATTCTAATCTCTTTCATCTCCCCTGA 960 0.5437 MQEIHSMGGTRFFGAADRRLRPHHHHNAAATTTNCHHQHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSSNDNRTSKTTKSNNSATATSSAETPPQTTSSQPPPPDQNANSHSSSESSNLTAAATAAATTATTELNSDSSKLLIHENNNNNASSNPNLESGGIFSEIGTFTSLMASSSSNNDALAFGFGGGGGIVPDTTSFQWHHQQQKLAENLNDGGGGGSLLDHHGQGSTVTVDLSALESKAGHGGFGPLDWQSGVDQGLFDLPNTVDHAYWSQTQWSDHDNSNLFHLP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2208g00001 319 MobiDBLite consensus disorder prediction 103 124 - -
Stsc2208g00001 319 MobiDBLite consensus disorder prediction 86 161 - -
Stsc2208g00001 319 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Stsc2208g00001 319 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 31 225 IPR045174 GO:0003700|GO:0006355
Stsc2208g00001 319 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Stsc2208g00001 319 MobiDBLite consensus disorder prediction 131 161 - -
Stsc2208g00001 319 Pfam Dof domain, zinc finger 40 96 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2208g00001 Stsc-Chr2208 287 1246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2208g00001 17 319 C2C2-Dof Transcription Factor Family AT5G60850 39.935 4.35e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc2208g00001 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2208g00001 - - adu:107468949 443.736