Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211932g00002 ATGGCGAAGCAAGGCACCATTCTTCACTGCACTGTGTTCTTGCTACTGTTTCAGATTCTAACATCACCAAAACCAGCAACATGCAAATCCACCATAGAACCCTGCACCAACAACAACTCATGCAACGCGCTCTTAGGCTACACACTCTACACGGACCTTAAAGTCTCCGAGGTAGCTTCACTCTTTCAAATCGATCCAATCTCTCTCCTCACCGCAAACGCCATCGACATCTCTTACCCTGACGTGGAGCACCATATTCTCCCTTCCAAGCTCTTCATCAAGGTCCCCATTTCATGCTCCTGCGTCGATGGGATCCGCAAATCGGTTTCAACGCATTACAGGACTCGCCCTTCAGACACGCTTTCTTCCATTGCAGACTCTGTCTATGGAGGTTTGGTATCTGCGGACCAGCTTTCCGAAGCTAACTCCATAAGTGATCCTTCTGTTCTTGATGTGGGTCAGAGCCTTGTGGTGCCTCTTCCTTGTACTTGTTTTAATGGCACTGATAATTCACTCCCTGCGATTTACATGTCCTATGTGGTTCAGCCTGTTGATTCTTTGGCTGCTATTGCGGCCAGGTATTTCACTACTTTAACTGATTTGATGGATGTTAATGCCATGGGAAGTACTGCTATTACTGATGGTGATATTCTTGCCATTCCAATTCCGGCTTGTGCTTCAAATTTCCCAAGATCTTCTGCTGATTTTGGCTTGCTTGTCCCCAATGGAAGTTATGCCATTACAGCAGGGCACTGTGTGCAGTGTAGCTGTGGACCACGGGATCTTAATTTGTACTGTATGCCGGCTTCGCTGGCTGTTTCTTGCTCCAGCATGCAATGTAAAAACAGCAATCTTATGCTTGGGAATGTTACAATCCAACAAGGTAGTGGCGGCTGCAATGTTACTTCTTGTAGCTACGATGGAATCGTTAATGGCACCATAATGACAACGTTGACACCATCCCTTCAACCTCGATGTCCAGGGCCTCAGCAATTCCCTCCTCTCGTCGCCCCACCTACATCGGTAAGGAGAGATTCAGAACTAGCCCCAGCACCAGCACCTCAATCAGATGGAATTGGTCTAGGAACACCCAAATCCTCGGTGGTTCCTTCAACAACAGGTCTTCCAGGATTCCCTCCGGCAAATGGTCCTATTAGTGCGCTTTCTTCTGGTGCTTCTGCCGCTTGCTCCTTGGTCATTCCATTACCCACCTTGACATCTGCACTTGTGTTATTACTTGTCAAGTTGATGATACCTGCGGNNNNNNNNNNTTTGTGGTGGGTTTGGCCCTGTTGCTTTGTCTGTCATAGGTGCTCTTATCTATTGCATACTCATTTGTAA 1341 0.4705 MAKQGTILHCTVFLLLFQILTSPKPATCKSTIEPCTNNNSCNALLGYTLYTDLKVSEVASLFQIDPISLLTANAIDISYPDVEHHILPSKLFIKVPISCSCVDGIRKSVSTHYRTRPSDTLSSIADSVYGGLVSADQLSEANSISDPSVLDVGQSLVVPLPCTCFNGTDNSLPAIYMSYVVQPVDSLAAIAARYFTTLTDLMDVNAMGSTAITDGDILAIPIPACASNFPRSSADFGLLVPNGSYAITAGHCVQCSCGPRDLNLYCMPASLAVSCSSMQCKNSNLMLGNVTIQQGSGGCNVTSCSYDGIVNGTIMTTLTPSLQPRCPGPQQFPPLVAPPTSVRRDSELAPAPAPQSDGIGLGTPKSSVVPSTTGLPGFPPANGPISALSSGASAACSLVIPLPTLTSALVLLLVKLMIPAXXXXLWWVWPCCFVCHRCSYLLHTHL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211932g00002 446 Gene3D LysM domain 168 229 IPR036779 -
Stsc211932g00002 446 CDD LysM 178 220 IPR018392 -
Stsc211932g00002 446 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Stsc211932g00002 446 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Stsc211932g00002 446 SUPERFAMILY LysM domain 177 222 IPR036779 -
Stsc211932g00002 446 Gene3D LysM domain 107 167 IPR036779 -
Stsc211932g00002 446 SMART LysM_2 178 221 IPR018392 -
Stsc211932g00002 446 SMART LysM_2 112 159 IPR018392 -
Stsc211932g00002 446 Pfam LysM domain 179 221 IPR018392 -
Stsc211932g00002 446 Pfam LysM domain 113 159 IPR018392 -
Stsc211932g00002 446 CDD LysM 111 158 IPR018392 -
Stsc211932g00002 446 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 8 330 - -
Stsc211932g00002 446 MobiDBLite consensus disorder prediction 326 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211932g00002 Stsc-Chr211932 2372 5597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211932g00002 12 397 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 68.798 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211932g00002 - - gmx:100808966 661.373