Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc182840g00002 ATGGGTTTGAGTTCTAAGCAGGTTTCAAGTACAGGACTTGATTGGAACAAGGCCTTGTTGCAATCATCACAAAACTTGGAGATACCATCAAAGATTAGTACTGATATGAACATGAGGAAACAACAACAACAACAACAGCAACAAACTCAGCAGCAGCAGCAACCTATGTTAGAGCCTCTGAGGTGTCCAAGATGTGATTCAACAAACACAAAGTTTTGTTACTACAACAATTACAACAAGTCTCAGCCTCGCCATTTCTGCAGAGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTCCGCAATGTTCCTGTTGGTGGTGGAAGGAAGAATAAGAGACCAACCAAGAAATCATCAACACACTCTTCTAATACCACCACCACTACCACTGTTACCACCTCAGATGGTGGTGGTGGTGGCAAAATAATGGAAGTTCAACATCAGAGTCTTCCTCTTCCTCCTCCTCCTCTTTACCAATCTATGATTCGTCCACCACCTTTGCTACCACAACAGAATAGTGTCTCAGAAGTTAAGGACTTTTGTGGTGGTAGTGGAATGTTTCTTAGTTCATCATCATCAGCTGTGAATCTTGCTCAAAGTCTAATCTTTCCCTTCTCAACAACATCAAGCTCTAGTTTTGATGCAAACCCATCATGTTCATCAGTTTCAGCCTCCAATATTTACAGCTATGGTGGAGAAGAGTTTAAGACAATGGAGGAGCCAAACATCAATGGTACTAACACACACCTGTGGGAGATTCCATTACCTGCTACAACAACAACAAGTGCTGCTGCTATGGAAATGTCTTCTAACTATTGGGGTTGGGAGGACCTTGATCCTTTGGTCTCAACTGATCTTAATGTTCCTTGGGATGATTCTGATATTAAACCTTGA 894 0.4228 MGLSSKQVSSTGLDWNKALLQSSQNLEIPSKISTDMNMRKQQQQQQQQTQQQQQPMLEPLRCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRPTKKSSTHSSNTTTTTTVTTSDGGGGGKIMEVQHQSLPLPPPPLYQSMIRPPPLLPQQNSVSEVKDFCGGSGMFLSSSSSAVNLAQSLIFPFSTTSSSSFDANPSCSSVSASNIYSYGGEEFKTMEEPNINGTNTHLWEIPLPATTTTSAAAMEMSSNYWGWEDLDPLVSTDLNVPWDDSDIKP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc182840g00002 297 ProSiteProfiles Zinc finger Dof-type profile. 60 114 IPR003851 GO:0003677|GO:0006355
Stsc182840g00002 297 ProSitePatterns Zinc finger Dof-type signature. 62 98 IPR003851 GO:0003677|GO:0006355
Stsc182840g00002 297 MobiDBLite consensus disorder prediction 98 142 - -
Stsc182840g00002 297 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 220 IPR045174 GO:0003700|GO:0006355
Stsc182840g00002 297 Pfam Dof domain, zinc finger 60 112 IPR003851 GO:0003677|GO:0006355
Stsc182840g00002 297 MobiDBLite consensus disorder prediction 118 136 - -
Stsc182840g00002 297 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc182840g00002 Stsc-Chr182840 9359 11547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc182840g00002 42 140 C2C2-Dof Transcription Factor Family AT1G51700 54.902 4.89e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc182840g00002 zf-Dof 5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc182840g00002 - - gmx:100818111 262.692