Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181646g00007 ATGGCTTTTTCTTCTCTCCACGTCTGCATGGATTCACCAGATCACTGGTTCCAGGGAACAGTTCACGAGGAGGCCACCGGCAACGGCGGCATGGACTCTTGTTGTTCACCATTATCCTCCGGCGGCGGCGGTGACATTATCAAATGCTCGACCGCAAGGCCAATGATGGAGAGAAGAATGAGACCTCCACACGACCAAGCTCTCAAGTGCCCTCGCTGTGACTCAACCCACACCAAATTCTGTTACTACAACAACTACAGCCTCTCTCAGCCCCGCTACTTCTGCAAAACCTGCAGACGCTACTGGACCAAAGGCGGCACCCTCCGCAACATCCCCGTCGGCGGCGGCTGCCGGAAAAACAAGAAACTCTCCTCCTCCTCCAATTCCAAGAAAAACCAACACCAATCCAACAACAACAACAATAACAATAATAATGATCCTAACAACCATCAACCACATTCTTCTTCTTCTTCCTCTGCTCTACTTCTACCATCTGCTTTCTCTGATCTCCAATTTTCTCACCTTAGTAACATTATTCTTGGTGGTGCTTGTAACCCTAATAATGGAAGCAGTACTTTCATGGAGAGCAAGTACAACGTTGGCATGCTTGAGAACAATGTTATTAGGCCAATTGACTTCATGGAGAGCAAGCTCGAAGGCATAATTGGTGGTGGGAGCGGTATTCATGGCTCTAGAAGCTTTGATTTCTTTGGGAATAATAATAATGGCAGCGACGACGGCAGCGGCAGCAACAACATCAACATGATGATGCTTGGTATGGCTGGTAATAATAATGTTGGATTTGGATCTAATTTTCATGGCCTTAGTTGCTCTCCAATTGCATCATTTGGTGGCATGTCACTTGTTAATGGTGGCAACAACAACAGTATTATGGATTCTCATCAGAGATCAATGATGCTGACATATGATGATGATGATGATAACAACCATACCCCAATTGATGTGAAGCCAAACCCTAACAAGCTTCTTTCCCTTGAATGGCAGCAGGATCATCACCATGGCTGTTCTGATGATGCAGGAAAAGACTCATTTGGGTACCTCAATAGCCATGGATCATGGCCCGGCATGATCAACGGCTATGGTTCCTCCACAACAAACCCTTTGCTATGA 1131 0.4633 MAFSSLHVCMDSPDHWFQGTVHEEATGNGGMDSCCSPLSSGGGGDIIKCSTARPMMERRMRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKLSSSSNSKKNQHQSNNNNNNNNNDPNNHQPHSSSSSSALLLPSAFSDLQFSHLSNIILGGACNPNNGSSTFMESKYNVGMLENNVIRPIDFMESKLEGIIGGGSGIHGSRSFDFFGNNNNGSDDGSGSNNINMMMLGMAGNNNVGFGSNFHGLSCSPIASFGGMSLVNGGNNNSIMDSHQRSMMLTYDDDDDNNHTPIDVKPNPNKLLSLEWQQDHHHGCSDDAGKDSFGYLNSHGSWPGMINGYGSSTTNPLL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181646g00007 376 ProSiteProfiles Zinc finger Dof-type profile. 68 122 IPR003851 GO:0003677|GO:0006355
Stsc181646g00007 376 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 57 239 IPR045174 GO:0003700|GO:0006355
Stsc181646g00007 376 MobiDBLite consensus disorder prediction 116 159 - -
Stsc181646g00007 376 Pfam Dof domain, zinc finger 65 122 IPR003851 GO:0003677|GO:0006355
Stsc181646g00007 376 MobiDBLite consensus disorder prediction 120 159 - -
Stsc181646g00007 376 ProSitePatterns Zinc finger Dof-type signature. 70 106 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181646g00007 Stsc-Chr181646 27107 29406 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181646g00007 1 376 C2C2-Dof Transcription Factor Family AT5G62940 38.647 2.41e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc181646g00007 zf-Dof 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181646g00007 - - ahf:112784757 421.779