Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181487g00004 ATGGGTTTGAGTTCTAAGCAGGTTTCTAGGAGTAGTAGTGGACATGATTGGAACCAAGCCTTATTGGAATCACAGAACTTGGAGCTTCCAATTCCAAAGATGAAGAAACAACAACAACAACAGAATCAATCATCATCAGAGCCATTGAAGTGTCCAAGATGTGAATCTACCAACACAAAGTTCTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCTATTTATGTAGAGCTTGCAAGAGGCACTGGACCAAAGGTGGAACTCTGCGCAATGTTCCAGTTGGTGGTGGAAGAAAGAACAAGAGGCCCAAAAAGTCAACAACCACCACCACCACCGCCACCACAGCCACAGCCACCAACTCTACTTGCACCACAAGCATCACAATTCAAGCTCCTTCTCTTGCAATGGATGATCACAAAAACTTATTAGCTTCTCCTCCTTCTTCTTCTTCTTCTCTCTACCAAGGTCTGATTCGTCCACCCCCTTTCCTACTACATCAGAATCTGATGAACAATATTATTACCACTACCAGAGGCATAACATCAGAAAGTAAAGGCTACGGTATTGGTATTGGTAATAATAATAATAACAATGGGATCTTTCTTGGTTCATCAGCTTTGTCTGTTCCTCAGAATAATCAAGGCTTGCTTTTTCCCTTCTCAACAGCATCAAGCTCTAATTTTGACACAAACCCATCTTTAGTTTCAGCTTCAACCTCTTTGCAATCCACCAATAATGTTTATAATAACTGTGGTGATGAGTTTAAAGCAATAGAGGAACCAACCATGCACAGCATAATGGCTACCACCACTACTTGTTCTACACAGCCATGGGAGATACCAGCAACAACAACAATGGAAATGTCAAACAACTATTGGGGTTGGGAGGACATTGATTCTTTGGTCTCTACTGATAATCCAAACAATAATCATCCTTGGGATGATTCCCATGATATCAAACCCTGA 966 0.4141 MGLSSKQVSRSSSGHDWNQALLESQNLELPIPKMKKQQQQQNQSSSEPLKCPRCESTNTKFCYYNNYNKSQPRYLCRACKRHWTKGGTLRNVPVGGGRKNKRPKKSTTTTTTATTATATNSTCTTSITIQAPSLAMDDHKNLLASPPSSSSSLYQGLIRPPPFLLHQNLMNNIITTTRGITSESKGYGIGIGNNNNNNGIFLGSSALSVPQNNQGLLFPFSTASSSNFDTNPSLVSASTSLQSTNNVYNNCGDEFKAIEEPTMHSIMATTTTCSTQPWEIPATTTMEMSNNYWGWEDIDSLVSTDNPNNNHPWDDSHDIKP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181487g00004 321 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 36 236 IPR045174 GO:0003700|GO:0006355
Stsc181487g00004 321 Pfam Dof domain, zinc finger 48 101 IPR003851 GO:0003677|GO:0006355
Stsc181487g00004 321 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Stsc181487g00004 321 MobiDBLite consensus disorder prediction 87 113 - -
Stsc181487g00004 321 MobiDBLite consensus disorder prediction 1 25 - -
Stsc181487g00004 321 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181487g00004 Stsc-Chr181487 9294 10259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181487g00004 49 120 C2C2-Dof Transcription Factor Family AT5G60200 63.014 3.81e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc181487g00004 zf-Dof 4.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181487g00004 - - gmx:100791855 303.908