Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181402g00009 ATGGAAGGGATAGGTCCCAACAACAACAATTCATGCACAACAAGGCCTCATCAAGGTGGTGGTGGAAATAATAACAACAATAATAATAACAATTTAGAGAAGAAAGCAAGGCCACAAGAGCAATTGAATTGTCCAAGGTGCAATTCAACAAACACAAAGTTTTGCTACTACAACAACTATAGCCTCACACAACCAAGGTATTTTTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGTCCCTCAGGAATGTCCCTGTTGGTGGTGGTTCAAGGAAGAACAAGATCAAGATCAATAATTCCAATAATAATAATAGTAATAACAACAATAACAACTCTTCATCATCTTCAAATTCAAAGGTTGTTGTTCATCATCAAGACCNNNNNNNNNNCCCTAATAGTAGGGTTATTCAAGGACAAGATCTTAATCTTGCTTTTCCAACTATGGATCATCATCATCACAACAAGTATCATGGTTTGTTACCATTTGTTGATATGGTTAATGGTGGTAGTAATCATAATAATAATAATAATAATAGTAATAATGGTGATGCACCAAGTTCTCTTTCAGCTTTGGAGCTTTTAAGGTCAAGCATGGCTTCTAGGGGTTTGAGTAACCCTTATGCTTCTTCTTCTAATTCATTGGTACCATCAAATTCAAGTGTAATTTACCCTACTTCTGGATTAGGGTTTCCAACCATGCAAGAAGTAGTTAGTAATAAGCAAAATATTAGTAGTAACCTTGGATTTTCTTCTCCTTCTTCTTCATCAATTATGGATCATCATCATCAAGAGAATATTGTGAATAATGATAATAGTGGTGGAGGAAGAGTTCTTTTCCCTTTTGGAGAGGTTATGAAGGGTGCTGAAGATGTTGGAAACAACAACAAAGAACAACAAGGGAATAATTCATCAAGCACTGCCCATGGTGGATATTGGAATGGAATGATGGGTGAAGGGTCATGGTGA 969 0.3622 MEGIGPNNNNSCTTRPHQGGGGNNNNNNNNNLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKIKINNSNNNNSNNNNNNSSSSSNSKVVVHHQDXXXXPNSRVIQGQDLNLAFPTMDHHHHNKYHGLLPFVDMVNGGSNHNNNNNNSNNGDAPSSLSALELLRSSMASRGLSNPYASSSNSLVPSNSSVIYPTSGLGFPTMQEVVSNKQNISSNLGFSSPSSSSIMDHHHQENIVNNDNSGGGRVLFPFGEVMKGAEDVGNNNKEQQGNNSSSTAHGGYWNGMMGEGSW 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181402g00009 322 MobiDBLite consensus disorder prediction 1 37 - -
Stsc181402g00009 322 MobiDBLite consensus disorder prediction 94 123 - -
Stsc181402g00009 322 MobiDBLite consensus disorder prediction 293 311 - -
Stsc181402g00009 322 Pfam Dof domain, zinc finger 40 95 IPR003851 GO:0003677|GO:0006355
Stsc181402g00009 322 MobiDBLite consensus disorder prediction 167 189 - -
Stsc181402g00009 322 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 216 IPR045174 GO:0003700|GO:0006355
Stsc181402g00009 322 MobiDBLite consensus disorder prediction 168 189 - -
Stsc181402g00009 322 MobiDBLite consensus disorder prediction 289 322 - -
Stsc181402g00009 322 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Stsc181402g00009 322 MobiDBLite consensus disorder prediction 80 134 - -
Stsc181402g00009 322 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181402g00009 Stsc-Chr181402 55166 57281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181402g00009 34 322 C2C2-Dof Transcription Factor Family AT3G61850 43.408 4.22e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc181402g00009 zf-Dof 7.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181402g00009 - - aip:107623806 426.017