Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181316g00005 ATGGTTTATACTTCCATCCCAGAATATATTGATCCAGTCAATTGGCATCAGCAACAGCAACCAAATCATCAGCAGAACAACATAGGTGGCACAAGCTCTCAACTTCTTCATCCCCCACCACCACCACCTCTTCCGCCATCGACCCAGCAACATGGATCCAATATAGCTGCTGTTGGCTCCATCAGACCTGGGTCGATGGCGGACAGGGCAAGGATGGCGAATATTCCCATGCAAGAGCCAGCACAAAAGTGTCCAAGATGCGAATCTACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAACCCCGCCACTTCTGCAAGACCTGCCGACGGTACTGGACCCGAGGCGGCGCCCTCAGGAACGTTCCCGTCGGTGGAGGCTGTCGGAGGAACAAGAGAACTAAAGGAACAACCACCAGCAACAGTCGCTCCAAGTCACCACCACCGAGCTCGGATCGCGGGGCCCCAACCGTCTCAGGTGGTGGCTTTGCCTCTGAAGTCGTCGGTCTTGGCCCTCCGGTGCCGCCGTCGCTGAGATTCATGGCTCCATTAATGCATCATCATCACCAACTTGGAGATCACTTTTCATCCGGAGTTGGCGGCGGCGGAGAGTTAGGCCTAAACTACGGCGGAGGAATAGGTGACTTAAATTTTCACATAGGAAGTGGTTTGAACGGCGGCGGAGGAAACGGCGGCAGCTCTCTGCTATCAGCGGCAGGTTTGGATCAATTGAGGGTTCCACAAACACAACAATTTCCTTTCATGGCAGGTTTCGAAGCTTCATCACATGGGCTATACCAATTTGAAAATAGTACTCATCATGAGGGTTCTGGATACGGCGGAGGAGGCAGCGGCGGTGTTGGGCCGAGTAAGGTGTCGAATTCTTTGAAGATGGAAGAAAGTAATAACAAAAATTTGGCAAGGCAGTTTTTGGGAATGAGTAGTAGTAATAATAATAATAATTCATTAGCAAGTAATAGTGAGCATTTTCTTAATGCTTGGACGCATCTTTCTGCTTTTTGTTCTTCTTCCAATACTACTACTACTACCAATAATCCACCATAG 1074 0.4944 MVYTSIPEYIDPVNWHQQQQPNHQQNNIGGTSSQLLHPPPPPPLPPSTQQHGSNIAAVGSIRPGSMADRARMANIPMQEPAQKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTKGTTTSNSRSKSPPPSSDRGAPTVSGGGFASEVVGLGPPVPPSLRFMAPLMHHHHQLGDHFSSGVGGGGELGLNYGGGIGDLNFHIGSGLNGGGGNGGSSLLSAAGLDQLRVPQTQQFPFMAGFEASSHGLYQFENSTHHEGSGYGGGGSGGVGPSKVSNSLKMEESNNKNLARQFLGMSSSNNNNNSLASNSEHFLNAWTHLSAFCSSSNTTTTTNNPP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181316g00005 357 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 51 273 IPR045174 GO:0003700|GO:0006355
Stsc181316g00005 357 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677|GO:0006355
Stsc181316g00005 357 MobiDBLite consensus disorder prediction 17 52 - -
Stsc181316g00005 357 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677|GO:0006355
Stsc181316g00005 357 MobiDBLite consensus disorder prediction 274 298 - -
Stsc181316g00005 357 MobiDBLite consensus disorder prediction 17 34 - -
Stsc181316g00005 357 MobiDBLite consensus disorder prediction 135 156 - -
Stsc181316g00005 357 MobiDBLite consensus disorder prediction 123 171 - -
Stsc181316g00005 357 Pfam Dof domain, zinc finger 81 136 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181316g00005 Stsc-Chr181316 52081 53583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181316g00005 1 272 C2C2-Dof Transcription Factor Family AT2G37590 42.953 5.28e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc181316g00005 zf-Dof 9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181316g00005 - - gmx:100796820 328.946