Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181284g00011 ATGGCTTTTTCTTCTCTCCACGTCTGCATGGATTCACCAGCTCACTGGTTCCAGGGCACAGTTCATGAGGAGGCCACCGGGGACGGCGGCATAGACTCTTCTTGTTCACCATTATCTTCCGCCGGCGGCGGTGACATTATCAAATGCTCGGCGGCAAGGCCAATGATGGAGAGAAGAATGAGACCTCCACACGACCAAGCTCTAAAGTGCCCTCGCTGTGACTCAACCCACACCAAATTCTGTTACTACAACAACTACAGCCTCTCTCAGCCCCGCTACTTCTGCAAAACCTGCAGAAGGTACTGGACCAAAGGCGGAACCCTCCGCAACATCCCCGTCGGCGGCGGCTGCCGCAAAAACAAGAAACACTCCTCCTCCAATTCCAAGAAAAACCAACACCAATCCAACAACAACAACAATAGTAATAATGATCCTAACAACCATCAACCACATTCTTCTTCTTCCTCTGCTCTAGTACTACCATCTGCTTTCTCTGATCTCCAATTTTCTCACCTTAGTAACATTATTTTTGGCGGTGCTGCTGGTAACCCTAATAATGGAAGTACTTTCATGGAGAGCAAGTACAACAACGTTGGCATGCTTGAGAACAATGTTATTAGGCCAATTGATTTCATGGAGAGCGGTATTCATGGCTCTAGAAGCTTTGATTTCTTTGGGAATAATAATGGCGGCGGCAACGACAACAGCAGCAACAGCAACAACATAAACATGATGATGCTTGGTATGGCTAGTAATAACAATGTTGGATTTGGATCTAATTTCCATGGACTTAATTGCTCTCCAATTGCATCATTTGGTGGCATGTGCAACAACAATGTCAATGGTGTTAATAATAATAGTTATATTATGGATTCTCATCAGAGATCAATGATGCTGACATATGAAGATGATGATGATGATAACCATACCCCAATTGATGTGAAGCCAAACCCTAATAAGCTTCTTTCCCTTGAATGGCAGCAAGATCATCACCATGGTTGTTCTGATGATGCAGGAAAAGACTCGTTTGGGTACCTCAATAGCCATGGATCATGGCCTGGCATGATCAACGGCTATGGTTCCTCCACAACAAACCCTTTGCTATGA 1107 0.4499 MAFSSLHVCMDSPAHWFQGTVHEEATGDGGIDSSCSPLSSAGGGDIIKCSAARPMMERRMRPPHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKHSSSNSKKNQHQSNNNNNSNNDPNNHQPHSSSSSALVLPSAFSDLQFSHLSNIIFGGAAGNPNNGSTFMESKYNNVGMLENNVIRPIDFMESGIHGSRSFDFFGNNNGGGNDNSSNSNNINMMMLGMASNNNVGFGSNFHGLNCSPIASFGGMCNNNVNGVNNNSYIMDSHQRSMMLTYEDDDDDNHTPIDVKPNPNKLLSLEWQQDHHHGCSDDAGKDSFGYLNSHGSWPGMINGYGSSTTNPLL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181284g00011 368 ProSiteProfiles Zinc finger Dof-type profile. 68 122 IPR003851 GO:0003677|GO:0006355
Stsc181284g00011 368 Pfam Dof domain, zinc finger 65 122 IPR003851 GO:0003677|GO:0006355
Stsc181284g00011 368 MobiDBLite consensus disorder prediction 129 157 - -
Stsc181284g00011 368 MobiDBLite consensus disorder prediction 113 157 - -
Stsc181284g00011 368 ProSitePatterns Zinc finger Dof-type signature. 70 106 IPR003851 GO:0003677|GO:0006355
Stsc181284g00011 368 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 56 237 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181284g00011 Stsc-Chr181284 134536 136551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181284g00011 1 368 C2C2-Dof Transcription Factor Family AT5G62940 40.000 1.02e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc181284g00011 zf-Dof 2.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181284g00011 - - ahf:112784757 432.565