Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151069g00014 ATGGATCCTTCTAATGGACATGAGCAAATGATGTCAAACAATAATAATAACAACCAGTCATTAGAAAGCATGTTGGGTTGCACATCATCAAAACCTGATCATCAACAAGTATTAGAACAAGATCAGAAGAAGGCAAGGCCACAACCAGAACAAGCATTGAAATGTCCAAGATGCGATTCCACAAACACGAAGTTCTGTTACTACAACAACTACAGCCTCTCACAGCCAAGGTACTTCTGCAAATCATGCAGAAGGTACTGGACCAAAGGTGGAACACTGAGGAATGTTCCAGTAGGTGGAGGCTGCAGAAAGAACAAAAGATCTTCTTCTTCTTCAACAAAGAGGGCTCAAGATCATCAATTACCATTTAACCCTTTAATCAATTCTCTGCCTCCATTGTCATCATATGACTCTGAATTCACACTTGCATTGGCTAGGCTCCAAAAACAAACATATGGTGTGCAACTTGGTCTTGATGATGGCCACCATGATCTCACACAACAACAACAACAAGGATTCTTGGATGCACTTAGAAGCAACAACAATAATGGATTCAACAACAACATGAACATGCAGAATGATTTGTACTATGGTGGTGGTGGTGATGATATGATGATTCCTTATGATCATCAGCAAGAAATGAGTAGTGTGGAAACAACTCAAGCAGTTACTGTCACAACCATAAAGCAAGAACTTTGCAATGTTGGTGGTGGTGGTGGCGGTGGCAGAGAACAAAGTGATAATTGCAATGGTAATAATAATAAGGTTTTGTGGGGCTTTCCATGGCAGATCAATGGAGACACAACAAACATGCTTGGAGACATTGCTGATTTATCATCATCAAGAGCAAGTTGGAATCTCACTACTACTCCATCATGGCATGGACTTCTCAATAGCCCCCTAATGTAG 909 0.407 MDPSNGHEQMMSNNNNNNQSLESMLGCTSSKPDHQQVLEQDQKKARPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSTKRAQDHQLPFNPLINSLPPLSSYDSEFTLALARLQKQTYGVQLGLDDGHHDLTQQQQQGFLDALRSNNNNGFNNNMNMQNDLYYGGGGDDMMIPYDHQQEMSSVETTQAVTVTTIKQELCNVGGGGGGGREQSDNCNGNNNKVLWGFPWQINGDTTNMLGDIADLSSSRASWNLTTTPSWHGLLNSPLM 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151069g00014 302 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 209 IPR045174 GO:0003700|GO:0006355
Stsc151069g00014 302 MobiDBLite consensus disorder prediction 1 54 - -
Stsc151069g00014 302 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
Stsc151069g00014 302 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
Stsc151069g00014 302 MobiDBLite consensus disorder prediction 36 50 - -
Stsc151069g00014 302 Pfam Dof domain, zinc finger 51 107 IPR003851 GO:0003677|GO:0006355
Stsc151069g00014 302 MobiDBLite consensus disorder prediction 1 35 - -
Stsc151069g00014 302 MobiDBLite consensus disorder prediction 97 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151069g00014 Stsc-Chr151069 108739 110178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151069g00014 51 302 C2C2-Dof Transcription Factor Family AT2G28510 41.606 1.30e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc151069g00014 zf-Dof 6.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151069g00014 - - cave:132163887 285.419