Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151039g00034 ATGATTCAAGAACTCTTCTCAGCTGGTGCTGCTGCCTTTGTAGCACCACCTGACAAGAAATTCTCCCTTACTAATGTTGTTGGAGGAGGACTTCTCTTACCACCAACACCACCACCACCTTCTTCTTCTTCCTCCACACCTACTACTACCACCACGGTTGTCGCCGCCACCTCATCCAATAGTTCGGAGAACCACCACCAGCAGAATCTGAGGTGTCCGCGGTGCGATTCATCCAACACGAAGTTCTGTTACTACAACAACTACAACCTTACACAGCCTCGCCATTTCTGCAAGACATGCCGAAGGTACTGGACCAAAGGCGGTGCTCTCAGGAACGTCCCCATCGGAGGTGGATGCCGGAAAAACAAGAACATCGGCGTGTCCAACTCGTCAGCGGCAAAGGCTTCCAGCTCCACCCCGAAGATTAAATCTATGGTTGCATCAGAGCTCAGAAAATCATCATCACCAGCTGGAGTAGTCGAGCAGCATGATCTTCCATCAGGACCAATCCTATGGGGATCTCCACAGAATAGTCATCTATTGTCTTTACTCAGAGCAAACCCTAACCCTAACCCTAGCTCCATGGTGATGAACGGTGTTTCAGTGAAGGAAGAACGGAACTTGATGGGATTATCATCCCATCACAACATGGTGAGTAATATTTCAAGAACCCTAGGGTATGATGGAGTTGGAGTTGGACAGATTCCTCAATTGGATCTGTGCAGTTCTTTGTGGAGAAACAATAATAACAATCAAGATCATCAACCTGCTGCTACTGCCTTTCTACTTGCTGAACAACAGCAAAGCAATGGAATTCAACAGCTTTACCATAAGATCAGGTCAACACCTAATAATAATTCACCGCCAATCTTCTTGCCAAACATCACTGCTTCTTCTTCGTCTTCTTCCTCTTCTTCTTTATCCACCATTTTGGAGTCATCTTCGGTTTCCGCCGCTGAATTGGGCTGCTGGAATCCAACTCTTCCCTGGCTTTCTGATCTTCCTGCAGCAACCAATGGTGCATACCCTAATTAA 1035 0.4696 MIQELFSAGAAAFVAPPDKKFSLTNVVGGGLLLPPTPPPPSSSSSTPTTTTTVVAATSSNSSENHHQQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGVSNSSAAKASSSTPKIKSMVASELRKSSSPAGVVEQHDLPSGPILWGSPQNSHLLSLLRANPNPNPSSMVMNGVSVKEERNLMGLSSHHNMVSNISRTLGYDGVGVGQIPQLDLCSSLWRNNNNNQDHQPAATAFLLAEQQQSNGIQQLYHKIRSTPNNNSPPIFLPNITASSSSSSSSSLSTILESSSVSAAELGCWNPTLPWLSDLPAATNGAYPN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151039g00034 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 60 273 IPR045174 GO:0003700|GO:0006355
Stsc151039g00034 344 Pfam Dof domain, zinc finger 68 124 IPR003851 GO:0003677|GO:0006355
Stsc151039g00034 344 ProSiteProfiles Zinc finger Dof-type profile. 70 124 IPR003851 GO:0003677|GO:0006355
Stsc151039g00034 344 MobiDBLite consensus disorder prediction 32 70 - -
Stsc151039g00034 344 ProSitePatterns Zinc finger Dof-type signature. 72 108 IPR003851 GO:0003677|GO:0006355
Stsc151039g00034 344 MobiDBLite consensus disorder prediction 45 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151039g00034 Stsc-Chr151039 188117 189776 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151039g00034 70 141 C2C2-Dof Transcription Factor Family AT5G60200 75.000 3.97e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc151039g00034 zf-Dof 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151039g00034 - - adu:107487764 449.899