Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121g00006 ATGGACACAGCTCAGTGGGCACAGCATGGAATTGGAGTGGTTAAAGCAATGGAAGGTTCTTCTCCATCTTCAACAAAACCGGCATGTTCATCATCATCTTTAGAGAGAAGAACAAGGCCAGTGAAGGATCAAGCACTTAACTGTCCACGGTGCAACTCAACCAACACAAAATTCTGTTACTACAACAACTACAGCCTCTCTCAGCCACGCTATTTCTGCAAAACGTGCCGAAGGTATTGGACTGAAGGCGGTTCCTTGAGAAACGTTCCTGTTGGCGGCGGTTCCAGAAAGAACAAGAGAACCGCCACAACAACAACAACACCACCTTCTTCATCATTATCACCACCACCACCACCACCATCATCAACAACCACCATACTTAATAATAGTAATAAGAATCCAAAGATCATCCACCATCAAGGACAAGATCTTAACTTAGCATACCCACCACCGGCGCCTCCTCCGCCGTCACATCACGAGGATTCTGCGACGGAATTTCTGAGAAGTAAGATCAATACTTCAAGGGGATTGAATATGAATTCTTTTATGCCGATGTCGATAATCTCGGATTCTACAATGTATAGTACGGCAGGGTTTGGTGCTCCGATGCAAGAGTTTCTTAAATCTGGTGGTGGTGGTGGTGGTGGACTTAACTTTAGTCTTGAACAAGGGTTTGAGAATAGTGGCGGTGGTGGCGGTTTTAGCGGCGGTTTACAAGGGATTCATCATCATCATCACCATCATGGTGAAGAAGAGGGAGGTGCAAGGGTTTTGTTTCCTTCTTCAGAAGATTTGAAGCAGCAGCAGCATCATCATCATCATCATCAAGTAGAGGTTACAACTACCACGGATTTCATGGAGCAGAATAACAATAGAGGTGCTGATTCAACTACTGCTGCTGCTGGGTTTTGGAATGGCATGTTAGGTGGAGCTTCATGGTAG 942 0.4544 MDTAQWAQHGIGVVKAMEGSSPSSTKPACSSSSLERRTRPVKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRTATTTTTPPSSSLSPPPPPPSSTTTILNNSNKNPKIIHHQGQDLNLAYPPPAPPPPSHHEDSATEFLRSKINTSRGLNMNSFMPMSIISDSTMYSTAGFGAPMQEFLKSGGGGGGGLNFSLEQGFENSGGGGGFSGGLQGIHHHHHHHGEEEGGARVLFPSSEDLKQQQHHHHHHQVEVTTTTDFMEQNNNRGADSTTAAAGFWNGMLGGASW 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121g00006 313 MobiDBLite consensus disorder prediction 18 35 - -
Stsc121g00006 313 MobiDBLite consensus disorder prediction 124 138 - -
Stsc121g00006 313 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 236 IPR045174 GO:0003700|GO:0006355
Stsc121g00006 313 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Stsc121g00006 313 MobiDBLite consensus disorder prediction 84 163 - -
Stsc121g00006 313 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Stsc121g00006 313 MobiDBLite consensus disorder prediction 17 41 - -
Stsc121g00006 313 Pfam Dof domain, zinc finger 43 100 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121g00006 Stsc-Chr121 49939 51889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121g00006 36 313 C2C2-Dof Transcription Factor Family AT3G61850 39.145 5.18e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc121g00006 zf-Dof 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121g00006 - - adu:107460523 338.191