Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc120859g00007 ATGCAAGATCCAACAACAACATTCCAAGTCCAACAAGCCATGCTGAAACAACCACACTTCCCAGAACAAGAACAACAGCTAAAGTGTCCAAGGTGTGAATCCACAAACACCAAGTTTTGTTACTACAACAACTACAACCTCTCTCAGCCACGCCATTTCTGCAAGAATTGCAGAAGGTATTGGACCAAAGGTGGTGCCTTGAGGAACATACCCGTTGGTGGTGGAACAAGAAAGACCCACAAACGTTCTTCATCTTCTTCACCTTCCACTTCAAATTCATCCACCAAACGCCCTTCATCATCATCATCATCATCATCACAACAAGCCAATTCTGTTACCAATAATAGTAATAACAGTGTTATTTGTTCCGGGTCTGAACCGACCCGAATTTGTGCCGACCCGGCTGGTCAAGATCAGAGGGTGTTGAACATTGGTGGGAGCTTTAGTTCACTATTGGGATCAAGTGGACATTTTGGGGGGATTTTTGAGGGTCTCAATTCAAATGGGTCAGGGCTGAAAATTGGTGAATTTGGTGGTGGGAATGGGAATGTGGGTTCTGGATTGGTTGCTAATCCGGATTCGGGTCGGAACCTGGGTTTGGATATTCAGAATAACGGTGACTCAAGCTATTGGAATAATGGTGGTGGTGGTCATGGTTGGTCTGATCTTGCAATACACACACCTGGATCAAGCTTTCAGTAG 702 0.4501 MQDPTTTFQVQQAMLKQPHFPEQEQQLKCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKTHKRSSSSSPSTSNSSTKRPSSSSSSSSQQANSVTNNSNNSVICSGSEPTRICADPAGQDQRVLNIGGSFSSLLGSSGHFGGIFEGLNSNGSGLKIGEFGGGNGNVGSGLVANPDSGRNLGLDIQNNGDSSYWNNGGGGHGWSDLAIHTPGSSFQ 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc120859g00007 233 ProSitePatterns Zinc finger Dof-type signature. 29 65 IPR003851 GO:0003677|GO:0006355
Stsc120859g00007 233 Pfam Dof domain, zinc finger 25 81 IPR003851 GO:0003677|GO:0006355
Stsc120859g00007 233 ProSiteProfiles Zinc finger Dof-type profile. 27 81 IPR003851 GO:0003677|GO:0006355
Stsc120859g00007 233 MobiDBLite consensus disorder prediction 78 119 - -
Stsc120859g00007 233 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 123 IPR045174 GO:0003700|GO:0006355
Stsc120859g00007 233 MobiDBLite consensus disorder prediction 68 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc120859g00007 Stsc-Chr120859 53298 54878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc120859g00007 1 162 C2C2-Dof Transcription Factor Family AT1G51700 51.744 8.55e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc120859g00007 zf-Dof 4.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc120859g00007 - - aip:107619380 265.774