Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3577 ATGCAATCAAACGGCTCTGATTCGCAACAAACGGAACAGAATCAACGACAACAACAAACGGTAACGCAGACGCCGCCACCGCCACAACCACAGCCACTGGCATTACCGCAACAGTGGATGCCGATGCAATACCCGGCGGCGGCTATGGTAATGCAGCATCATATGTTGCCACCTCAACATTATGCGCCGCCGCCACCGCAACCCTACATGCCTTACCCCCAGTACCACCAGTTACCGCATGTACCACATCCTCAGCATCAAGGATCCAGCGGCGACAACAAGACCATATGGGTCGGCGATTTACATCATTGGATGGATGAAAGTTATTTACATCGCTGCTTCGCTTCCACGGGAGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGCCACGGCTGAGAACGTTTTACAGAATTATGCTGCCATTTTGATGCCCAATACAGAGCAACCTTTCCGCCTGAACTGGGCAACGTTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACGGATAGCTTGTTGCATGAAACTTTTGCTAGTAGATATCCTTCTGTCAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGTCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCGCAGGCTATGACTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGTATTGGTGCCGCAACTCCTAGGAAATCATCTGGTTATCAACAAGGAAGTCATGTGTCAAACGGAACATCCAGTCAATCTGAAGCAGATTCAACAAACACAACAATATTTGTTGGAGGACTCGACCCTAATGTTACAGATGACGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAGGGATGTGGATTCGTTCAATTTGCAAACAGaaATAATGCTGAAGAAGCCCTGCAGAAGCTTAATGGGACAATGATAGGCAAACAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGGAAATAAGCAGCAGTTTAGAGTGGAGTTCAGCAACCCCTGGAGTGGGGCATATTATGGAGGCCCTGTTTATGATGGCTATGGATATGCGTTGCCACCTCCTCACGACCCAAGCATATATGCTGCTGCATATGGAACTTACCCCGTATATGGCGGCCACCAACAGCAAGTAAGCTGA 1275 0.4643 MQSNGSDSQQTEQNQRQQQTVTQTPPPPQPQPLALPQQWMPMQYPAAAMVMQHHMLPPQHYAPPPPQPYMPYPQYHQLPHVPHPQHQGSSGDNKTIWVGDLHHWMDESYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAENVLQNYAAILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDSLLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQGSHVSNGTSSQSEADSTNTTIFVGGLDPNVTDDDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPGNKQQFRVEFSNPWSGAYYGGPVYDGYGYALPPPHDPSIYAAAYGTYPVYGGHQQQVS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3577 424 SUPERFAMILY RNA-binding domain, RBD 55 174 IPR035979 GO:0003676
Sto9g3577 424 MobiDBLite consensus disorder prediction 1 35 - -
Sto9g3577 424 SUPERFAMILY RNA-binding domain, RBD 186 368 IPR035979 GO:0003676
Sto9g3577 424 SMART rrm1_1 294 361 IPR000504 GO:0003723
Sto9g3577 424 SMART rrm1_1 188 262 IPR000504 GO:0003723
Sto9g3577 424 SMART rrm1_1 95 170 IPR000504 GO:0003723
Sto9g3577 424 Gene3D - 186 262 IPR012677 -
Sto9g3577 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 365 IPR000504 GO:0003723
Sto9g3577 424 MobiDBLite consensus disorder prediction 264 289 - -
Sto9g3577 424 MobiDBLite consensus disorder prediction 267 289 - -
Sto9g3577 424 Gene3D - 272 395 IPR012677 -
Sto9g3577 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 174 IPR000504 GO:0003723
Sto9g3577 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 358 IPR000504 GO:0003723
Sto9g3577 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 158 IPR000504 GO:0003723
Sto9g3577 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 258 IPR000504 GO:0003723
Sto9g3577 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Sto9g3577 424 MobiDBLite consensus disorder prediction 1 22 - -
Sto9g3577 424 CDD RRM3_NGR1_NAM8_like 292 363 - -
Sto9g3577 424 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 32 423 - -
Sto9g3577 424 CDD RRM2_SECp43_like 186 265 - -
Sto9g3577 424 Gene3D - 93 173 IPR012677 -
Sto9g3577 424 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 32 423 - -
Sto9g3577 424 CDD RRM1_SECp43_like 95 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3577 Sto-Chr9 34599799 34602897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3577 95 392 Eukaryotic Initiation Factors Gene Family AT2G23350 28.571 2.46e-23 100
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0301 5 1796795 1799461 Sto9g3577 9 34599799 34602897 CCT
Sto9g3577 9 34599799 34602897 Sto9g3577 9 34599799 34602897 ECH