Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3547 ATGCGTGGAATGGGTCTTGTGCTTGAGAATTGCGAGGGCATTATACTGTCCCTGGACTCTCACAAATCGGTGCCCGCACCCTTCCTGACGAAGACGTACCAGCTGGTGGATGATCCCTCCACCGATCACATAGTATCTTGGGGCGAAGACGACACCACCTTCGTCGTCTGGCGTCCCCCCGAGTTTGCTAGGGATCTTCTCCCCAACTACTTCAAGCACAACAACTTCTCCAGCTTCGTCCGCCAGCTCAACACCTATGGTTTCAGAAAGATCGTGCCGGACAGATGGGAGTTCGCAAACGAGTTGTTCAAGAAGGGAGAGAAGCACTTGCTATGCGACATCCACAGACGAAAAACTGCTCAGCCTCAGCCTCACCATCATCACGGCATGTTCCCTCGACTCATGAGTCTGTCTCCCTCTCCCCCCAACGACTCCGACTCCGAGTGGTGTGAGCCCCCTTCTCCCACACCCCTTCCCTCCTCCAACTACAACAACGCTTCCGTCACGGCGCTCTCCCAGGACAATGAAAGACTCCGCCGCAGCAACACCATGCTCATGTCTGAACTCGCTCACATGAAGAAGCTCTATAACGACATCATCTACTTCGTCCAGAACCACGTCAAGCCCGTCGCTCCTTCTTCCTTGCTATTCTCCAATAATACtcctcactctcactctcactctcacccGCCCCCATCCAATCCGCATTATTTGGGGTATTATCCAACAACTCATCTCCTCAACTCTCCCACCTCTAAGACCTCCCTCACCATTGTAGAAGAGCCCAGCTGCAAGACCAAGCTCTTTGGAGTGTCTCTTCAATCCAAGAAAAGAGTGCACCCTGACTATGCCTTTCCTCCTCCCAATCCCAATTCATCCCACCCCAACAAGCCTCGTTTGCTGTTGGAAAACCATGACCTAGCCTTGAATCTCATGCCTTCTTCCTCTTGTTTtcacaattaa 963 0.5057 MRGMGLVLENCEGIILSLDSHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANELFKKGEKHLLCDIHRRKTAQPQPHHHHGMFPRLMSLSPSPPNDSDSEWCEPPSPTPLPSSNYNNASVTALSQDNERLRRSNTMLMSELAHMKKLYNDIIYFVQNHVKPVAPSSLLFSNNTPHSHSHSHPPPSNPHYLGYYPTTHLLNSPTSKTSLTIVEEPSCKTKLFGVSLQSKKRVHPDYAFPPPNPNSSHPNKPRLLLENHDLALNLMPSSSCFHN 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3547 320 Pfam HSF-type DNA-binding 28 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto9g3547 320 Gene3D - 20 119 IPR036388 -
Sto9g3547 320 PANTHER BNAC06G00310D PROTEIN 17 315 - -
Sto9g3547 320 PRINTS Heat shock factor (HSF) domain signature 28 51 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto9g3547 320 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto9g3547 320 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto9g3547 320 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 315 IPR027725 -
Sto9g3547 320 MobiDBLite consensus disorder prediction 119 164 - -
Sto9g3547 320 ProSitePatterns HSF-type DNA-binding domain signature. 67 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto9g3547 320 SUPERFAMILY "Winged helix" DNA-binding domain 25 117 IPR036390 -
Sto9g3547 320 SMART hsfneu3 24 117 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3547 Sto-Chr9 34466890 34467943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3547 4 316 HSF AT1G46264 56.906 2.09e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto9g3547 HSF_DNA-bind 3.7e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1177 5 7902257 7903446 Sto9g3547 9 34466890 34467943 CCT
Sto9g3547 9 34466890 34467943 Sto9g3547 9 34466890 34467943 ECH