LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto9g3542	ATGCAAGGGCAAAGGGGTACAATAGGTTCCTTGCCTGAAACCATAGAATTTGATTGTGGATCTACGTCAAGTAATGCTACTGTGGATCAGCAGATATGCTGGGATAGCACAAGGAATCCTGATGAAAATCAAATATCTGAATTTATACTCTCACCTGCTGATATGAACCCAGCATATGCCAATTCTATTAACCATGATTGGAAGAACTTGAGCGGTTGGAGTTTTGGTGGGCCAAGTTCCAGTGGTGCACAAACTGAGATGAACAATAATGAGCAGAAAAGAGAGCTCGGATGGTCATCTTCAAGAAGTTCTGGTACTGTAGCTGGTTCAAGATTAGAGCAGCATTTTGAGCCAACTAATTTTCTTTCATTGGACAATGTTAATACAAGTCCTATGTGTATGCATAGCTCCAATCCTCATGCTATGTCGCATAGTCTCAACTTAAATGCTGGTTTGGCTGACGGTGGCAGCGATACTAGTCAGAATCTGGAGCTTTCTAGTTTCAACAAGTCTAGTGGATCAGTAAATGAACCTATTCCACCTTCTATTGGTTCTGCCCCGTTCTTTCTTCCTTCAGGAAATAACAACTTGGTAGATGAGGCTATTGTTAGGCCAAATTGTTCTCATGATACCCGCCGTGTATCTCGTAAAAGAAAGGCCGTTGATGGCTATATCGGACAATCTTCAGGTGGTGGAAGTTCTAGCTACTGCCAGCATCCAGAAAGTAGTGCCTGGCACACTCTTCCTACACAGAATAATGATAGAAGCAGTTTAAGTAGATCTGCTCCATCAGCACAGGTAAGTTCACGACTTGGCCTGGGTATGAGGGACAAATCCCCTGAGAGCATTCATGATTTGAATGTTGCAGGAAGCTCAAATAGCTTCCACAGAAATATTCGGTTGAGGATAAATCCGTCAAACCAACAAGATTCTGTGCCTCCCACTGCATTCTCAAATGGGAATGTGATCAGGCACTCTACTGTTTCTCCATTGTGCTCTGTGTCACAAAGGTTTCCTCCTCTTGATAATTCTCTGGACCTGAGGTCAGCACCATCATTAGATAATATGGTTCCTCAAAGCCTCCCCCTTGGAACCAGTCCTTCTTTACCAAGGAATATGCAGCCATTTAGATGGAATGGCAGTTCTAGCTCAAGAAACAGTCATTTGTCAAACACCATTATTTGTTCAGACAGGGATAATCTCCAACATGAAGAACCAGGCTCAAGAAGTATGCCTAGAAACATATCAGAACACCCAATGCTTGTGACTGCTGCTGATTTAAGAAATGTAGCTCGAAATCCAACAAGTAGGTCTTTAGGAGGTGCAAATTTAAATGTAAATTCCTCATCACGGACTGGGTCAAATTCATTCAGCAATCATCCTCCACCTGCCCCAACATGGGTTTCTCGACCTAATCCTCCACAGTATCCACGTAGGTTATCTGAATATGTTCGTAGATCATTGCTGTCTTCCGGTTCTGAGGCTGCTGCAGGTTCAAGCAACAACTATTCTTTCTTGCGCGCTGCTCCTATTACTTCATCTGAAGCAAGGGCACTATCTTCCCGGGCTGGTAGCCAGGGACGTCATCAGTCACACTCAAGATCATTGTCATGGTTGGAGAGGCAAGGTGATAGTGACTTTAGAGTTCCCTATTCATTACAAACTCTGGCTGTTGCCAGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGAAATGTTTTAGGCATCATGCGTAGGGGTGGGAATCTTCGGTTTGAGGATTTTATGATCCTTGACCATTCGATATTTTCTGGAATGGCTGATATTCATGACCGACACAGGGACATGAGACTTGATGTGGATAACATGTCATATGagGAGCTACTGGCTTTGGAAGAACGCATAGGAAATGTGAGTACTGGATTGAGCGAGGAAACGATATTGAAATTACTGAAACAGAAAAAGTATTCTGTTGAAGAAGGATCTCAGGTTGAGGCAGAACCTTGCTGTATTTGTCAGGAAGAGTTTAGCAACGGAAATGATATTGGAACGCTGGATTGTGGCCATGATTACCATACCAACTGTATCAAACAGTGGTTAATGCAAAAGAATCTGTGTCCCATTTGTAAGACAACGGGCTTGGCAACATAA	2130	0.4315	MQGQRGTIGSLPETIEFDCGSTSSNATVDQQICWDSTRNPDENQISEFILSPADMNPAYANSINHDWKNLSGWSFGGPSSSGAQTEMNNNEQKRELGWSSSRSSGTVAGSRLEQHFEPTNFLSLDNVNTSPMCMHSSNPHAMSHSLNLNAGLADGGSDTSQNLELSSFNKSSGSVNEPIPPSIGSAPFFLPSGNNNLVDEAIVRPNCSHDTRRVSRKRKAVDGYIGQSSGGGSSSYCQHPESSAWHTLPTQNNDRSSLSRSAPSAQVSSRLGLGMRDKSPESIHDLNVAGSSNSFHRNIRLRINPSNQQDSVPPTAFSNGNVIRHSTVSPLCSVSQRFPPLDNSLDLRSAPSLDNMVPQSLPLGTSPSLPRNMQPFRWNGSSSSRNSHLSNTIICSDRDNLQHEEPGSRSMPRNISEHPMLVTAADLRNVARNPTSRSLGGANLNVNSSSRTGSNSFSNHPPPAPTWVSRPNPPQYPRRLSEYVRRSLLSSGSEAAAGSSNNYSFLRAAPITSSEARALSSRAGSQGRHQSHSRSLSWLERQGDSDFRVPYSLQTLAVASEGSSRLVSELRNVLGIMRRGGNLRFEDFMILDHSIFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKQKKYSVEEGSQVEAEPCCICQEEFSNGNDIGTLDCGHDYHTNCIKQWLMQKNLCPICKTTGLAT	709

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto9g3542	709	MobiDBLite	consensus disorder prediction	517	537	-	-
	Sto9g3542	709	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	1	708	IPR045191	GO:0061630
	Sto9g3542	709	MobiDBLite	consensus disorder prediction	209	279	-	-
	Sto9g3542	709	MobiDBLite	consensus disorder prediction	433	463	-	-
	Sto9g3542	709	MobiDBLite	consensus disorder prediction	152	178	-	-
	Sto9g3542	709	MobiDBLite	consensus disorder prediction	345	397	-	-
	Sto9g3542	709	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1	1	708	-	-
	Sto9g3542	709	MobiDBLite	consensus disorder prediction	227	268	-	-
	Sto9g3542	709	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	625	706	IPR013083	-
	Sto9g3542	709	ProSiteProfiles	Zinc finger RING-type profile.	662	703	IPR001841	-
	Sto9g3542	709	MobiDBLite	consensus disorder prediction	78	109	-	-
	Sto9g3542	709	MobiDBLite	consensus disorder prediction	433	474	-	-
	Sto9g3542	709	CDD	RING-H2_TTC3	661	703	-	-
	Sto9g3542	709	Pfam	Ring finger domain	662	703	IPR001841	-
	Sto9g3542	709	SMART	ring_2	662	702	IPR001841	-
	Sto9g3542	709	SUPERFAMILY	RING/U-box	649	705	-	-
	Sto9g3542	709	MobiDBLite	consensus disorder prediction	345	416	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto9g3542	Sto-Chr9	34435145	34438460	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto9g3542	217	709	C3H Transcription Factor Family	AT2G15530	38.803	9.73e-84	278

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto5g1170	5	7860039	7863605	Sto9g3542	9	34435145	34438460	CCT
	Sto9g3542	9	34435145	34438460	Sto2g0586	2	4958675	4961783	ECH
	Sto9g3542	9	34435145	34438460	Sto10g0269	10	2168095	2173157	ECH
	Sto9g3542	9	34435145	34438460	Sto9g3542	9	34435145	34438460	ECH