Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3498 ATGGGATCAGAGACTTACACCTACATGGGACGCACTATCAGCCAATTGACTCTCAACGATGATTCCTCTTCTGCTTTCAGCGACTGTAACAGTGACAGATCTGGTGAATTTCCTTCTGCTTCTTCCCAGAGCCGCCGTCTTCTCATTGCTTGCGCTTCTGAAAATTCCGATGATTTTATTCGTCAGCTTGTCTCTGATCTCCACTCCTCTTCCATCGACGACCAAAAGCAAGCCGCCTTGGAGATCAGATTGCTTTCCAAGAACAAATCAGAGAATCGCCTCAAAATCGCCAAAGCCGGCGCAATTAAGCCCTTAATTTCACTTATATCTTCGCCTGACCTTCAGCTCCAAGAGTACGGCGTGACGGCCATTTTGAATCTCTCGTTGTGCGACGAGAACAAAGATGTTATAGCTTCATCGGGAGCGATTAGGCCACTGGTTCGAGCCCTGAAGACAGGGACAGCAACGGCTAAAGAGAACGCAGCTTGTGCCTTACTTCGTCTGTCGCAAATAGAGGAGAACAAGATGGCAATTGGGAGGTCAGGAGCCATTCCGCTGCTAGTGAGTCTTCTTGAGAACGGAGGAATCCGTGGGAAAAAAGACGCATCGACGGCACTATATTCGCTGTGTTCGGCGAAGGAGAACAAGATGAGAGCGGTACAAGCAGGAATAATGAAGGTGTTAGTGGAATTGATGGCTGATTTAGGATCAAACATGGTAGACAAGTCGGCGTACGTGTTGAGCGTGCTGGTGTCGGTAGCGGAGGCGAGAAGAGCATTAGTGGAGGAAGGAGGAATTCCTGTGATGGTGGAGATAATAGAAGTGGGCTCTCAGAGACAGAAGGAAATCGCTGTGGTCATTCTGTTGCAGATTTGTGAGGATAGCATGGCCTATCGTACCATGGTTGCCCGCGAAGGGGCCATTCCTCCTTTGGTTGCATTGTCCCAGTCCGGCACCAATCGCGCCAAACACAAGGCGGAGACACTAATAGATCTTCTGCGGCAACCAAGATCCGGCAACCTCGCTGCCCGTACCTCACAAGTGTCAGCATAA 1053 0.4986 MGSETYTYMGRTISQLTLNDDSSSAFSDCNSDRSGEFPSASSQSRRLLIACASENSDDFIRQLVSDLHSSSIDDQKQAALEIRLLSKNKSENRLKIAKAGAIKPLISLISSPDLQLQEYGVTAILNLSLCDENKDVIASSGAIRPLVRALKTGTATAKENAACALLRLSQIEENKMAIGRSGAIPLLVSLLENGGIRGKKDASTALYSLCSAKENKMRAVQAGIMKVLVELMADLGSNMVDKSAYVLSVLVSVAEARRALVEEGGIPVMVEIIEVGSQRQKEIAVVILLQICEDSMAYRTMVAREGAIPPLVALSQSGTNRAKHKAETLIDLLRQPRSGNLAARTSQVSA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3498 350 Gene3D - 199 337 IPR011989 -
Sto9g3498 350 Gene3D - 28 197 IPR011989 -
Sto9g3498 350 PANTHER U BOX DOMAIN-CONTAINING 5 343 - -
Sto9g3498 350 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE ISOFORM X1 5 343 - -
Sto9g3498 350 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 100 142 IPR000225 GO:0005515
Sto9g3498 350 SUPERFAMILY ARM repeat 56 329 IPR016024 -
Sto9g3498 350 SMART arm_5 89 129 IPR000225 GO:0005515
Sto9g3498 350 SMART arm_5 130 170 IPR000225 GO:0005515
Sto9g3498 350 SMART arm_5 171 211 IPR000225 GO:0005515
Sto9g3498 350 SMART arm_5 253 293 IPR000225 GO:0005515
Sto9g3498 350 SMART arm_5 295 335 IPR000225 GO:0005515
Sto9g3498 350 SMART arm_5 212 252 IPR000225 GO:0005515
Sto9g3498 350 Pfam Armadillo/beta-catenin-like repeat 90 128 IPR000225 GO:0005515
Sto9g3498 350 Pfam Armadillo/beta-catenin-like repeat 173 211 IPR000225 GO:0005515
Sto9g3498 350 Pfam Armadillo/beta-catenin-like repeat 131 169 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3498 Sto-Chr9 34225635 34227030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3498 24 340 U-box Gene Family AT2G23140 47.706 1.78e-87 274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1113 5 7495428 7497158 Sto9g3498 9 34225635 34227030 CCT