Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3491 ATGGACAAAATGATTGCGGATGACGTTATAATTGTTGGCAAGTCTGCTTTCGGAACAACTCAGAAGTGCATGGCTTGTGAGAAAACAGTTTATCTGGTTGATAAGTTAACTGCGGATAACCGAGTGTACCACAAGGCTTGCTTCAGATGCCACCACTGCAAGGGAACCCTCAAGCTTAGTAACTACAATTCTTTCGAGGGAGTTCTTTACTGTAGGCCACACTTCGACCAGTTGTTCAAAAGAACCGGTAGCCTTGACAAAAGCTTCCAAGGGACACCCAAAATAGCTAAACCAGAAAAAACCGTTGATGGTGagAAAGCTACAGCAACCAAAGTGTCAAGTATGTTTGGTGGAACTAGGGACAGATGTGCAGGTTGTCAGAAAACAGTCTATCCAACCGAGAAGGTTACTGTTAATGGAACTCCTTACCACAAGAGTTGTTTCAAATGCTGCCATGGAGGGTGTGTTATAAGTCCTTCCAACTACATTGCACACGAGGGCAAACTGTACTGCAAACATCACCATATCCAGCTGATCAAGGAGAAGGGCAATTTGAGCCAGCTTGAAGGTGACCATGACAAGACTACTGCAATCAATGCATGA 603 0.4411 MDKMIADDVIIVGKSAFGTTQKCMACEKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFQGTPKIAKPEKTVDGEKATATKVSSMFGGTRDRCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHDKTTAINA 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3491 200 CDD LIM2_SF3 123 183 - -
Sto9g3491 200 ProSitePatterns LIM zinc-binding domain signature. 23 57 IPR001781 -
Sto9g3491 200 CDD LIM1_SF3 19 81 - -
Sto9g3491 200 ProSiteProfiles LIM domain profile. 21 81 IPR001781 -
Sto9g3491 200 PANTHER OS06G0237300 PROTEIN 17 197 IPR045268 GO:0051015
Sto9g3491 200 Pfam LIM domain 123 177 IPR001781 -
Sto9g3491 200 Pfam LIM domain 23 77 IPR001781 -
Sto9g3491 200 ProSiteProfiles LIM domain profile. 121 181 IPR001781 -
Sto9g3491 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 149 188 - -
Sto9g3491 200 Gene3D Cysteine Rich Protein 18 87 - -
Sto9g3491 200 Gene3D Cysteine Rich Protein 118 187 - -
Sto9g3491 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 115 148 - -
Sto9g3491 200 SMART lim_4 122 174 IPR001781 -
Sto9g3491 200 SMART lim_4 22 74 IPR001781 -
Sto9g3491 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 49 89 - -
Sto9g3491 200 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 17 197 - -
Sto9g3491 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 16 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3491 Sto-Chr9 34182957 34184371 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Sto9g3491 LIM 1.5e-12 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g1103 5 7407335 7408702 Sto9g3491 9 34182957 34184371 CCT
Sto9g3491 9 34182957 34184371 Sto9g3491 9 34182957 34184371 ECH