Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g3126 atggaagTGTATGAACATGATCATTTCTTGGAAGAATTATTGGCTCTGAGAAAGGAAACAGAAGAGAACTATGTGTTCTCCAATAATGAGTGGAGTACTAGTTTTGATCAAAACTCTTTGGCTTTTGTTCCACACTACTCTTCTCCCTCTCAACAAATTCCTGAATCTTACAACAACTACGCCTTCAATGAAATCTATAGCTCCTTGCTGGATGAATTCTCTGCACCCCACAATGTTGGTGATTCATCTTCCTCAtcctataataataataataattttcttgaCACTACATTTATTGTGGGTCAAGAAGATTATAATTATTACCCATTGTCCTGGATGGAGGAATTAGAGGATCCTGCTTTGCTTGGGGAAGAGCTTCAGAGCCTGGACCTGCAAAACCCATGTAAGAGAGAGCCATCCCAATCCCCTGAAATAATAATGCCATCTTTCAACATTGGAGATATGCCTTTGGAAAGAAAGAATCGATCCAAGAAGCTTCAGGGCCAGCCCTCCAAGAATCTAATGGctgagaggagaagaagaaagagattgAACGATCGCCTCTCAATGCTCAGATCAATTGTCCCCAAGATAAGTAAGATGGACAGAACATCTATACTTGGAGACACTATAGACTACATGAAAGAGCTGCTGGAGAAGATTAACAAATTGCAACAAGAAATAGAGGTAGATTCACACATGGCAGGCATTTTTATGAATAATGCAAAGCAAGATGAAATCTTGGTGAGAAATTCACCCAAGTTTGATGTGGAGAGGAGGAATGTGGACACACAGGTGGAAATTTGCTGTGCAGGAAAGCCAGGGATGTTGCAATCTACGGTGAACACTTTGGAGGCCTTAGGTCTTGAGATTCAACAATGTGTTATTAGTTGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCTGAGGAAAATGAGCAGAGGGCAATTGTGAGTTCTGAAGATATAAAGCAAGCATTATTCAGAAGTGCAGGATATGGAGGAAGATGTTTGAGTAGTAGTGTAACATTTGGTTCAAGTAGAGACGATAGATGTGTATTAAATGCAGATTGGCTATGTTCTCTCAAAACACAAGTCTTCAATTTCATTGTGAAATCTGTTTCATGTAAATGTGATATTGTCCCTCGGAATTTCCCCTGA 1161 0.3807 MEVYEHDHFLEELLALRKETEENYVFSNNEWSTSFDQNSLAFVPHYSSPSQQIPESYNNYAFNEIYSSLLDEFSAPHNVGDSSSSSYNNNNNFLDTTFIVGQEDYNYYPLSWMEELEDPALLGEELQSLDLQNPCKREPSQSPEIIMPSFNIGDMPLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINKLQQEIEVDSHMAGIFMNNAKQDEILVRNSPKFDVERRNVDTQVEICCAGKPGMLQSTVNTLEALGLEIQQCVISCFNDFTMQASCSEENEQRAIVSSEDIKQALFRSAGYGGRCLSSSVTFGSSRDDRCVLNADWLCSLKTQVFNFIVKSVSCKCDIVPRNFP 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g3126 386 CDD ACT_UUR-ACR-like 264 305 - -
Sto9g3126 386 Gene3D - 158 232 IPR036638 GO:0046983
Sto9g3126 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 231 IPR036638 GO:0046983
Sto9g3126 386 Pfam Helix-loop-helix DNA-binding domain 174 217 IPR011598 GO:0046983
Sto9g3126 386 SMART finulus 174 223 IPR011598 GO:0046983
Sto9g3126 386 Coils Coil 207 234 - -
Sto9g3126 386 Coils Coil 10 30 - -
Sto9g3126 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Sto9g3126 386 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 18 338 - -
Sto9g3126 386 PANTHER DNA BINDING PROTEIN 18 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g3126 Sto-Chr9 31901262 31902786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g3126 159 338 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.760 6.91e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto9g3126 HLH 8.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g3126 - - gmx:100814388 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g3126 9 31901262 31902786 Sto9g3126 9 31901262 31902786 ECH