Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2724 ATGGACACAACTCAGTGGGCACAGGGAATAGGAGTGGTTAAAGAGAGGAGTAGTCCGATGGAAGGTTCAATTCCAAAGGGTGCAGGTGCAGCAGGCGTGACGACGTCGTCAGAGAGAAAGGCTCGGCCTCAGAAAGATCAAGCTCTGAACTGCCCAAGGTGCAATTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCCTGTCTCAGCCTAGATACTTCTGCAAGACTTGTAGAAGGTACTGGACGGAGGGTGGGTCCCTCAGAAATGTTCCCGTGGGTGGAGGCTCACGCAAGAACAAGAGATCCTCATCAGCTTCCAATTCAAATTCCTCTGCTAACATTCTCTCAAAATCCACCGCCAATAAGCAGCTTATCCCTGATCTCGCTGCGCCTCCGCCCAATTTCTCCGACTCTGCTGCCTCACAGAACCCCAAGATCCACCAAGCCCAAGATCTTAACTTAGCCTATCCTCCACCCTCCGATCACGACTATACAATTACTAATACCATATCCAAATTCATTGAGTTTCCttatactactactactaccactgatcatcatcatcaagacAAGACTAGTGCCACTACCACTACTCATTCTTCTTCCAATCATCAGCATCAGCTATCTCACATGGAGCTTCTCAAGAGTGGGATTGCGTCGTCAAGGGGGTTGGGGTCTTTCATGCCCATGTCCATGGCGTCGGATAATCATTATGGTTCTAGCGGATTTGGTTTGCAAGAGTTCAAGCCTCCCCCTGGGCTTAGCTTCAGTGTGGAAGGGTTTGAGAATGGGTATGGGGGTATTTCGGGAATTCAAGAGGGAGGAGGTAATAGTGGCGGTGGTGGTGAGAGGGTTTTGTTTCCTATGGAGGATCTGAAGCAAGTGGCCACTACTACTGATCACTATGAACAGAATAGAAGCCACCACCATGCGGATTCAACGGGGTATTGGAATGGCATGTTAGGTGGAGGAACCTGgtaa 987 0.4721 MDTTQWAQGIGVVKERSSPMEGSIPKGAGAAGVTTSSERKARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSSASNSNSSANILSKSTANKQLIPDLAAPPPNFSDSAASQNPKIHQAQDLNLAYPPPSDHDYTITNTISKFIEFPYTTTTTTDHHHQDKTSATTTTHSSSNHQHQLSHMELLKSGIASSRGLGSFMPMSMASDNHYGSSGFGLQEFKPPPGLSFSVEGFENGYGGISGIQEGGGNSGGGGERVLFPMEDLKQVATTTDHYEQNRSHHHADSTGYWNGMLGGGTW 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2724 328 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 325 - -
Sto9g2724 328 MobiDBLite consensus disorder prediction 127 146 - -
Sto9g2724 328 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 325 IPR045174 GO:0003700|GO:0006355
Sto9g2724 328 MobiDBLite consensus disorder prediction 98 115 - -
Sto9g2724 328 MobiDBLite consensus disorder prediction 184 208 - -
Sto9g2724 328 MobiDBLite consensus disorder prediction 1 48 - -
Sto9g2724 328 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Sto9g2724 328 MobiDBLite consensus disorder prediction 90 115 - -
Sto9g2724 328 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Sto9g2724 328 Pfam Dof domain, zinc finger 46 103 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2724 Sto-Chr9 29119861 29121447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto9g2724 35 328 C2C2-Dof Transcription Factor Family AT3G61850 42.623 2.36e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto9g2724 zf-Dof 1.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2724 - - vvi:100264143 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2724 9 29119861 29121447 Sto5g1309 5 8937010 8938749 ECH
Sto6g1177 6 11291066 11292538 Sto9g2724 9 29119861 29121447 ECH
Sto1g0881 1 9535656 9549177 Sto9g2724 9 29119861 29121447 ECH
Sto9g2724 9 29119861 29121447 Sto9g2724 9 29119861 29121447 ECH