Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto8g2802 CTGCCGGAGATCCAAGACGTGTACGGAGACTCCGCCGGAGCTCcggctgatgatgatgatggtgatgatgctATTCATCTGAATCatgcctcttcttcttcttcctccaactCGTCGCTGGAGTCCAACGCGAAGAAGAGGGATGGAGAAGAGCAAGAGCGAGAAGAGACTAAGATGGGGGACACAATGGGAGAAAAAGCACTTGAGGATAGTAACGAAGATGAAGCCCCCACCCAGTCTTCAGATGAGTTCAGCAATCAAGATGCTGCCTCTAGGACGTACGAAGATTCTATTATGACCGAGAAGGAAGCAACGGCACTGAAGATTTCAAAAATTGAAGGGCAAAATGAGGCATGTAATTCACAAGGGAAGACACTAAAAAAACCAGACAAAATACTACATTGTCCCCGCTGTAATAGCATGGAAACCAAATTCTGCTATTACAACAATTACAATGCTAACCAACCCCGGCACTTCTGCAAGAACTGCCAGAGATACTGGACTGCTGGTGGGACCATGAGGAACGTTCCCGTGGGTGCTGGTCGCCGGAAGAACAAGAACTCGGCTTCTAATTCCTCGAAAGCTAATGGCCCATCAGTCCTTACATGCGGGTCCAACACACCTGGAATTGAATCAACAACACACAACTGCACAAGAAATGGATTTCATAAATTAATTGAAGATACAAAGGTCAACAGGTCTGAAGAACAAGTAATGTCGAATTGCCAGAGCTACCTTCCTCAAGTTCCCTCTTTTCCTGGGGCTCCTTGGCCTTTCCCATGGAATCCGATGTCGTGGACGACCTCTGCTGTACCACCATCACCTGCTTTTTGCCCTCCAGGATATACCATGCCTTTTTATCCTACAGGAGCTTATTGGGGCTGTGCTGTATCAGGTGCTTGGAACATGCCATGGCTAGTTCAGCCATCATCACCAAACTTGGGCAAACATTCAAGGGAAGGAAACATGCTCAAGTCAAATGACACTAAGGGAGAAGAaaataacaaagaaaaatgCCTCTGGGTTCCGAAAACATTGAGGATTGTTGGTGACCCTGGGGAAGCAGCAAAAAGCTCTATATGGACAACATTAGGGATAAAAAATGATGAGGTTAACTCAATTCACAAGGGAGGGTTGTTCAAGGCATTCCCATCAACAAAGGATGATGAAAAAATTCACTCAACGCAAACCCCTCCGGTCGACTTGCACGCCGCCAATCCGGCGGCGCTGTCGAGATCACTCAACTTCCATGAGACCTCATAA 1263 0.4458 LPEIQDVYGDSAGAPADDDDGDDAIHLNHASSSSSSNSSLESNAKKRDGEEQEREETKMGDTMGEKALEDSNEDEAPTQSSDEFSNQDAASRTYEDSIMTEKEATALKISKIEGQNEACNSQGKTLKKPDKILHCPRCNSMETKFCYYNNYNANQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASNSSKANGPSVLTCGSNTPGIESTTHNCTRNGFHKLIEDTKVNRSEEQVMSNCQSYLPQVPSFPGAPWPFPWNPMSWTTSAVPPSPAFCPPGYTMPFYPTGAYWGCAVSGAWNMPWLVQPSSPNLGKHSREGNMLKSNDTKGEENNKEKCLWVPKTLRIVGDPGEAAKSSIWTTLGIKNDEVNSIHKGGLFKAFPSTKDDEKIHSTQTPPVDLHAANPAALSRSLNFHETS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto8g2802 420 Pfam Dof domain, zinc finger 130 187 IPR003851 GO:0003677|GO:0006355
Sto8g2802 420 MobiDBLite consensus disorder prediction 43 73 - -
Sto8g2802 420 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 25 191 - -
Sto8g2802 420 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 228 419 - -
Sto8g2802 420 PANTHER CYCLIC DOF FACTOR 2 25 191 IPR045174 GO:0003700|GO:0006355
Sto8g2802 420 ProSiteProfiles Zinc finger Dof-type profile. 133 187 IPR003851 GO:0003677|GO:0006355
Sto8g2802 420 MobiDBLite consensus disorder prediction 314 335 - -
Sto8g2802 420 MobiDBLite consensus disorder prediction 78 94 - -
Sto8g2802 420 PANTHER CYCLIC DOF FACTOR 2 228 419 IPR045174 GO:0003700|GO:0006355
Sto8g2802 420 MobiDBLite consensus disorder prediction 177 200 - -
Sto8g2802 420 MobiDBLite consensus disorder prediction 1 96 - -
Sto8g2802 420 MobiDBLite consensus disorder prediction 27 42 - -
Sto8g2802 420 ProSitePatterns Zinc finger Dof-type signature. 135 171 IPR003851 GO:0003677|GO:0006355
Sto8g2802 420 MobiDBLite consensus disorder prediction 321 335 - -
Sto8g2802 420 MobiDBLite consensus disorder prediction 184 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto8g2802 Sto-Chr8 20315196 20317580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto8g2802 69 420 C2C2-Dof Transcription Factor Family AT5G39660 44.363 8.07e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto8g2802 zf-Dof 6.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto8g2802 - - aprc:113862693 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto8g2802 8 20315196 20317580 Sto3g1560 3 11555816 11556812 ECH
Sto8g2802 8 20315196 20317580 Sto12g0910 12 5640707 5643275 ECH
Sto8g2802 8 20315196 20317580 Sto8g2802 8 20315196 20317580 ECH
Sto8g2802 8 20315196 20317580 Sto13g1769 13 25136405 25139584 ECH
Sto11g0936 11 9845216 9847904 Sto8g2802 8 20315196 20317580 ECH
Sto6g3012 6 37228473 37231053 Sto8g2802 8 20315196 20317580 ECH